Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NSQ21_RS18320 Genome accession   NZ_CP150158
Coordinates   3536758..3537447 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. PS210     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3531758..3542447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ21_RS18285 (NSQ21_18285) flgN 3531938..3532420 (-) 483 WP_003227999.1 flagellar protein FlgN -
  NSQ21_RS18290 (NSQ21_18290) flgM 3532436..3532702 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ21_RS18295 (NSQ21_18295) - 3532783..3533202 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  NSQ21_RS18300 (NSQ21_18300) comFC 3533276..3533998 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  NSQ21_RS18305 (NSQ21_18305) comFB 3533962..3534258 (-) 297 WP_003227989.1 late competence protein ComFB -
  NSQ21_RS18310 (NSQ21_18310) comFA 3534318..3535709 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  NSQ21_RS18315 (NSQ21_18315) - 3535815..3536660 (-) 846 WP_003244125.1 DegV family protein -
  NSQ21_RS18320 (NSQ21_18320) degU 3536758..3537447 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSQ21_RS18325 (NSQ21_18325) degS 3537530..3538687 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NSQ21_RS18330 (NSQ21_18330) - 3538904..3539557 (+) 654 WP_003227979.1 YigZ family protein -
  NSQ21_RS18335 (NSQ21_18335) tagV 3539557..3540723 (+) 1167 WP_019712707.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  NSQ21_RS18340 (NSQ21_18340) - 3540796..3541872 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=963939 NSQ21_RS18320 WP_003219701.1 3536758..3537447(-) (degU) [Bacillus sp. PS210]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=963939 NSQ21_RS18320 WP_003219701.1 3536758..3537447(-) (degU) [Bacillus sp. PS210]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1