Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NSQ21_RS16360 Genome accession   NZ_CP150158
Coordinates   3144988..3145632 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. PS210     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3139988..3150632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ21_RS16325 (NSQ21_16325) - 3141180..3141611 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NSQ21_RS16330 (NSQ21_16330) - 3141611..3141952 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NSQ21_RS16335 (NSQ21_16335) - 3141945..3143426 (+) 1482 WP_019712488.1 Na+/H+ antiporter subunit D -
  NSQ21_RS16340 (NSQ21_16340) - 3143432..3143908 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NSQ21_RS16345 (NSQ21_16345) - 3143908..3144192 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NSQ21_RS16350 (NSQ21_16350) mnhG 3144176..3144550 (+) 375 WP_003228812.1 monovalent cation/H(+) antiporter subunit G -
  NSQ21_RS16355 (NSQ21_16355) - 3144589..3144969 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  NSQ21_RS16360 (NSQ21_16360) comA 3144988..3145632 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NSQ21_RS16365 (NSQ21_16365) comP 3145713..3148010 (-) 2298 WP_033884760.1 histidine kinase Regulator
  NSQ21_RS16370 (NSQ21_16370) comX 3148018..3148179 (-) 162 WP_003228803.1 competence pheromone ComX -
  NSQ21_RS16375 (NSQ21_16375) - 3148194..3149054 (-) 861 WP_019712927.1 polyprenyl synthetase family protein -
  NSQ21_RS16380 (NSQ21_16380) degQ 3149239..3149379 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NSQ21_RS16385 (NSQ21_16385) - 3149601..3149726 (+) 126 WP_003228793.1 hypothetical protein -
  NSQ21_RS16390 (NSQ21_16390) - 3149840..3150208 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=963932 NSQ21_RS16360 WP_003220716.1 3144988..3145632(-) (comA) [Bacillus sp. PS210]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=963932 NSQ21_RS16360 WP_003220716.1 3144988..3145632(-) (comA) [Bacillus sp. PS210]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1