Detailed information NTG0096393

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DAETH_RS00685
• Genome accession: NZ_AP026560
• Coordinates: 140872..142014 (-)
• Length: 380 a.a.
• NCBI ID: WP_264776046.1
• Uniprot ID: -
• Organism: Deinococcus aetherius strain ST0316
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 135872..147014

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DAETH_RS00655 (DAETH_01260)	-	136192..137151 (+)	960	Protein_127	IS701 family transposase	-
DAETH_RS00660 (DAETH_01270)	-	137188..137973 (-)	786	WP_264774389.1	IS982 family transposase	-
DAETH_RS00665	-	138023..138276 (+)	254	Protein_129	IS701 family transposase	-
DAETH_RS00670 (DAETH_01290)	-	138943..139629 (+)	687	WP_264776043.1	arginase	-
DAETH_RS00675 (DAETH_01300)	-	139715..140260 (+)	546	WP_264776044.1	VUT family protein	-
DAETH_RS00680 (DAETH_01310)	-	140257..140631 (+)	375	WP_264776045.1	hypothetical protein	-
DAETH_RS00685 (DAETH_01330)	pilD	140872..142014 (-)	1143	WP_264776046.1	A24 family peptidase	Machinery gene
DAETH_RS00690 (DAETH_01340)	rimO	142114..143592 (-)	1479	WP_264777358.1	30S ribosomal protein S12 methylthiotransferase RimO	-
DAETH_RS00695 (DAETH_01350)	-	143837..144244 (+)	408	WP_264776047.1	transposase	-
DAETH_RS00700 (DAETH_01360)	-	144339..145217 (+)	879	WP_264776048.1	folate-binding protein YgfZ	-
DAETH_RS00705 (DAETH_01370)	-	145210..145647 (+)	438	WP_264776049.1	hypothetical protein	-
DAETH_RS00710 (DAETH_01380)	-	145953..146963 (-)	1011	WP_264776050.1	ABC transporter permease	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 39600.87 Da
• Isoelectric Point: 8.4473

>NTDB_id=96393 DAETH_RS00685 WP_264776046.1 140872..142014(-) (pilD) [Deinococcus aetherius strain ST0316]
MSLDLLLVVFAGVLGLLVGSFSNVLVWRLPRGENVAFPPSHCPGCDHRLSPVDLVPVGSWLALGGKCRYCRSPIKSRYPV
VEALTGLGYAVIAVLFPLTTYGAGTLGLMALFTLLLVASAIDLDTYTIPDELTLPGVALGLAFAFLNTRSGAAEAGLPTF
QGAVQGALLGAGLLVTIDLIGSWVLRRFRERQYPEAPIGYQQISLALLVGAWLGPWWGLGAALVSAAVNLAARRVVRVPE
VVTLGGFLVSVALGGSGFGPGLILMVQGALAAAGAASLVAGMYWWLRREPEGEADAPFDPSAMGFGDVKLAAVIGAFLGW
ERLLVAVVVAVVAGAMLGLLQLALKKENRVKFGPYLALGAVVALIWGGAIVQGYRGMLGL

Nucleotide

• Length: 1143 bp

>NTDB_id=96393 DAETH_RS00685 WP_264776046.1 140872..142014(-) (pilD) [Deinococcus aetherius strain ST0316]
GTGAGTCTCGACCTTCTCCTCGTGGTGTTCGCGGGTGTCCTCGGGCTGCTCGTGGGCTCGTTCTCGAACGTGCTGGTCTG
GCGGCTGCCGCGCGGGGAAAACGTCGCCTTTCCGCCCAGCCACTGTCCCGGCTGCGATCACCGCCTCTCTCCCGTGGACC
TCGTGCCGGTCGGCTCGTGGCTCGCGCTGGGGGGCAAGTGCCGCTACTGCCGCTCGCCGATCAAGAGCCGTTACCCGGTC
GTGGAGGCGCTGACCGGCCTGGGCTACGCCGTCATCGCGGTCCTCTTCCCGCTGACCACCTACGGGGCGGGCACGCTGGG
GCTGATGGCGCTGTTCACCCTGCTCCTCGTGGCGAGCGCCATCGACCTCGACACGTACACCATTCCCGATGAGTTGACGC
TGCCGGGGGTGGCTTTGGGGCTGGCCTTCGCGTTCCTGAACACGCGCTCGGGGGCAGCGGAGGCCGGACTCCCGACCTTT
CAGGGCGCGGTGCAGGGTGCCCTGCTCGGCGCGGGGCTGCTCGTCACCATCGACCTGATCGGGTCCTGGGTGCTCCGGCG
GTTCCGGGAGCGGCAGTACCCGGAAGCTCCCATCGGCTACCAGCAGATCAGCCTCGCCCTGCTCGTGGGCGCCTGGCTGG
GGCCGTGGTGGGGGCTGGGGGCGGCGCTCGTCTCGGCGGCGGTCAACCTCGCGGCGCGGCGGGTTGTCCGGGTGCCGGAG
GTCGTCACGCTGGGCGGTTTCCTCGTCAGCGTGGCGCTGGGGGGCAGCGGCTTCGGGCCGGGCCTGATCCTGATGGTGCA
GGGGGCACTCGCGGCGGCGGGCGCGGCCTCGCTCGTGGCGGGCATGTACTGGTGGCTGAGGCGCGAGCCCGAGGGAGAGG
CTGACGCCCCCTTCGACCCCAGCGCGATGGGTTTCGGGGACGTGAAGCTCGCCGCCGTGATCGGCGCGTTCCTGGGATGG
GAGCGGCTGCTCGTGGCGGTCGTCGTGGCGGTCGTGGCGGGGGCGATGCTGGGGCTGCTGCAACTCGCCCTGAAAAAGGA
GAACCGGGTGAAGTTCGGTCCCTACCTGGCGCTGGGCGCGGTCGTCGCCCTGATCTGGGGCGGCGCGATCGTGCAGGGTT
ACCGGGGGATGCTGGGGTTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (109-226)

• Type IV leader peptidase family (Peptidase_A24) (236-339)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-95)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	71.134	100	0.726