Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   ACJEIB_RS00745 Genome accession   NZ_CP174236
Coordinates   168861..169553 (+) Length   230 a.a.
NCBI ID   WP_011214413.1    Uniprot ID   -
Organism   Legionella pneumophila strain SPF589     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 163861..174553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEIB_RS00725 (ACJEIB_00725) - 164478..164654 (-) 177 WP_011214409.1 dodecin domain-containing protein -
  ACJEIB_RS00730 (ACJEIB_00730) - 164832..167300 (+) 2469 WP_011214410.1 hypothetical protein -
  ACJEIB_RS00735 (ACJEIB_00735) dapB 167403..168134 (-) 732 WP_011214411.1 4-hydroxy-tetrahydrodipicolinate reductase -
  ACJEIB_RS00740 (ACJEIB_00740) - 168319..168504 (-) 186 WP_027266210.1 hypothetical protein -
  ACJEIB_RS00745 (ACJEIB_00745) rocC 168861..169553 (+) 693 WP_011214413.1 ProQ/FINO family protein Regulator
  ACJEIB_RS00750 (ACJEIB_00750) - 169554..170624 (+) 1071 WP_011214414.1 hypothetical protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25765.67 Da        Isoelectric Point: 10.7292

>NTDB_id=963907 ACJEIB_RS00745 WP_011214413.1 168861..169553(+) (rocC) [Legionella pneumophila strain SPF589]
MRKQALHPRTAVINKAQKNQSRRARSDALLWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVL
FTRRLDYLACLKTREVRIDLLGNPVAEVTEEEAEHASMKIKKRVEKSVKNARKQVNAKAANHSHVNSQSSTVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEEKKETAE

Nucleotide


Download         Length: 693 bp        

>NTDB_id=963907 ACJEIB_RS00745 WP_011214413.1 168861..169553(+) (rocC) [Legionella pneumophila strain SPF589]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAGGCGAGCGCGATCTGA
CGCATTATTATGGCTTGCGGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGCCCATTAAAGATTGGTATTA
TGTCCGATATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAATTTCTAAAAGTAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAACTCGTGAAGTCCGTATCGATTTGCTCGGAAATCCAGTAGCCGA
GGTTACTGAGGAAGAAGCTGAGCATGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
AAGTGAATGCAAAAGCGGCTAATCATTCGCATGTAAATAGTCAGTCAAGTACAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGACTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTAGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCCGTAGCCCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGAGAAAAAGGAAACAGCAGAGTAA

Domains

Predicted by InterProScan.

ProQ/FINO family (ProQ)

(26-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

95.652

100

0.957