Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NSQ83_RS18680 Genome accession   NZ_CP150157
Coordinates   3597742..3599133 (-) Length   463 a.a.
NCBI ID   WP_198878462.1    Uniprot ID   -
Organism   Bacillus sp. PS217     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3592742..3604133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ83_RS18645 (NSQ83_18645) flgL 3592914..3593810 (-) 897 WP_106073351.1 flagellar hook-associated protein FlgL -
  NSQ83_RS18650 (NSQ83_18650) flgK 3593821..3595344 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  NSQ83_RS18655 (NSQ83_18655) flgN 3595363..3595845 (-) 483 WP_014481048.1 flagellar protein FlgN -
  NSQ83_RS18660 (NSQ83_18660) flgM 3595861..3596127 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ83_RS18665 (NSQ83_18665) - 3596208..3596627 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  NSQ83_RS18670 (NSQ83_18670) comFC 3596700..3597422 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  NSQ83_RS18675 (NSQ83_18675) comFB 3597386..3597682 (-) 297 WP_015483764.1 late competence protein ComFB -
  NSQ83_RS18680 (NSQ83_18680) comFA 3597742..3599133 (-) 1392 WP_198878462.1 ATP-dependent helicase ComFA Machinery gene
  NSQ83_RS18685 (NSQ83_18685) - 3599239..3600084 (-) 846 WP_003244125.1 DegV family protein -
  NSQ83_RS18690 (NSQ83_18690) degU 3600182..3600871 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSQ83_RS18695 (NSQ83_18695) degS 3600954..3602111 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NSQ83_RS18700 (NSQ83_18700) - 3602328..3602981 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52593.64 Da        Isoelectric Point: 10.0153

>NTDB_id=963855 NSQ83_RS18680 WP_198878462.1 3597742..3599133(-) (comFA) [Bacillus sp. PS217]
MNVPVEKNGSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKSLNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHIKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=963855 NSQ83_RS18680 WP_198878462.1 3597742..3599133(-) (comFA) [Bacillus sp. PS217]
GTGAATGTGCCAGTTGAAAAAAACGGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAATCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATATAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATTTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCATCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(327-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.136

100

0.991