Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NSQ83_RS14545 Genome accession   NZ_CP150157
Coordinates   2784371..2785117 (-) Length   248 a.a.
NCBI ID   WP_088467305.1    Uniprot ID   -
Organism   Bacillus sp. PS217     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2779371..2790117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ83_RS14515 (NSQ83_14515) - 2779699..2780133 (+) 435 WP_213418940.1 helix-turn-helix transcriptional regulator -
  NSQ83_RS14520 (NSQ83_14520) - 2780147..2780593 (+) 447 WP_041345305.1 ImmA/IrrE family metallo-endopeptidase -
  NSQ83_RS14525 (NSQ83_14525) - 2780642..2782060 (+) 1419 WP_213418944.1 recombinase family protein -
  NSQ83_RS14530 (NSQ83_14530) radC 2782059..2782480 (-) 422 Protein_2816 DNA repair protein RadC -
  NSQ83_RS14535 (NSQ83_14535) - 2782517..2783086 (-) 570 WP_088467303.1 Maf family nucleotide pyrophosphatase -
  NSQ83_RS14540 (NSQ83_14540) spoIIB 2783239..2784237 (-) 999 WP_088467304.1 stage II sporulation protein SpoIIB -
  NSQ83_RS14545 (NSQ83_14545) comC 2784371..2785117 (-) 747 WP_088467305.1 A24 family peptidase Machinery gene
  NSQ83_RS14550 (NSQ83_14550) - 2785257..2786549 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NSQ83_RS14555 (NSQ83_14555) valS 2786609..2789251 (-) 2643 WP_085187377.1 valine--tRNA ligase -
  NSQ83_RS14560 (NSQ83_14560) - 2789699..2789890 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26455.05 Da        Isoelectric Point: 9.7944

>NTDB_id=963844 NSQ83_RS14545 WP_088467305.1 2784371..2785117(-) (comC) [Bacillus sp. PS217]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFMLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=963844 NSQ83_RS14545 WP_088467305.1 2784371..2785117(-) (comC) [Bacillus sp. PS217]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCACTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTATGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992