Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NSQ83_RS08870 Genome accession   NZ_CP150157
Coordinates   1687852..1688745 (+) Length   297 a.a.
NCBI ID   WP_198878774.1    Uniprot ID   -
Organism   Bacillus sp. PS217     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1682852..1693745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ83_RS08850 (NSQ83_08850) - 1683522..1685252 (+) 1731 WP_198878773.1 hypothetical protein -
  NSQ83_RS08855 (NSQ83_08855) - 1685249..1685530 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  NSQ83_RS08860 (NSQ83_08860) sucC 1685703..1686860 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  NSQ83_RS08865 (NSQ83_08865) sucD 1686889..1687791 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  NSQ83_RS08870 (NSQ83_08870) dprA 1687852..1688745 (+) 894 WP_198878774.1 DNA-processing protein DprA Machinery gene
  NSQ83_RS08875 (NSQ83_08875) topA 1688933..1691008 (+) 2076 WP_198878775.1 type I DNA topoisomerase -
  NSQ83_RS08880 (NSQ83_08880) trmFO 1691084..1692391 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSQ83_RS08885 (NSQ83_08885) xerC 1692459..1693373 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32873.19 Da        Isoelectric Point: 9.9142

>NTDB_id=963820 NSQ83_RS08870 WP_198878774.1 1687852..1688745(+) (dprA) [Bacillus sp. PS217]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLPRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=963820 NSQ83_RS08870 WP_198878774.1 1687852..1688745(+) (dprA) [Bacillus sp. PS217]
TTGGATCAGGCTGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCCGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCTGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGCGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

99.327

100

0.993
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377