Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABE75_RS06275 Genome accession   NZ_AP028869
Coordinates   1284611..1285126 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain JBEHAAB-19-0176     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1279611..1290126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABE75_RS06230 csrA 1280468..1280653 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABE75_RS06260 yqaB 1281841..1282407 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABE75_RS06265 yqaA 1282404..1282832 (+) 429 WP_001287454.1 YqaA family protein -
  AABE75_RS06270 gshA 1282905..1284461 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AABE75_RS06275 luxS 1284611..1285126 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABE75_RS06280 emrB 1285190..1286728 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABE75_RS06285 emrA 1286745..1287917 (-) 1173 WP_022646013.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABE75_RS06290 emrR 1288044..1288574 (-) 531 WP_000378441.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABE75_RS06295 ygaH 1288665..1289000 (-) 336 WP_000119759.1 L-valine transporter subunit YgaH -
  AABE75_RS06300 ygaZ 1288990..1289727 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=96382 AABE75_RS06275 WP_001130211.1 1284611..1285126(+) (luxS) [Escherichia coli strain JBEHAAB-19-0176]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=96382 AABE75_RS06275 WP_001130211.1 1284611..1285126(+) (luxS) [Escherichia coli strain JBEHAAB-19-0176]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment