Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSQ83_RS02315 Genome accession   NZ_CP150157
Coordinates   416484..416933 (-) Length   149 a.a.
NCBI ID   WP_003234608.1    Uniprot ID   A0A8E0S750
Organism   Bacillus sp. PS217     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 411484..421933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ83_RS02280 (NSQ83_02280) - 411759..412439 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  NSQ83_RS02285 (NSQ83_02285) - 412449..413312 (-) 864 WP_029727074.1 transporter substrate-binding domain-containing protein -
  NSQ83_RS02290 (NSQ83_02290) - 413474..413666 (+) 193 Protein_408 hypothetical protein -
  NSQ83_RS02295 (NSQ83_02295) - 413702..414022 (+) 321 Protein_409 RDD family protein -
  NSQ83_RS02300 (NSQ83_02300) - 414104..414436 (+) 333 WP_015252849.1 YckD family protein -
  NSQ83_RS02305 (NSQ83_02305) bglC 414589..416022 (+) 1434 WP_032722901.1 6-phospho-beta-glucosidase -
  NSQ83_RS02310 (NSQ83_02310) nin/comJ 416059..416457 (-) 399 WP_032722902.1 DNA-entry nuclease inhibitor Regulator
  NSQ83_RS02315 (NSQ83_02315) nucA/comI 416484..416933 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  NSQ83_RS02320 (NSQ83_02320) tlpC 417101..418822 (-) 1722 WP_029727077.1 methyl-accepting chemotaxis protein TlpC -
  NSQ83_RS02325 (NSQ83_02325) hxlB 418933..419490 (-) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  NSQ83_RS02330 (NSQ83_02330) hxlA 419496..420128 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  NSQ83_RS02335 (NSQ83_02335) hxlR 420361..420723 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16470.42 Da        Isoelectric Point: 4.5282

>NTDB_id=963794 NSQ83_RS02315 WP_003234608.1 416484..416933(-) (nucA/comI) [Bacillus sp. PS217]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=963794 NSQ83_RS02315 WP_003234608.1 416484..416933(-) (nucA/comI) [Bacillus sp. PS217]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98