Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OO986_RS09950 Genome accession   NZ_AP026552
Coordinates   2143207..2144607 (-) Length   466 a.a.
NCBI ID   WP_011149911.1    Uniprot ID   A0AAN1PPC9
Organism   Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2138207..2149607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO986_RS09915 (VV208B2_18320) moaE 2138782..2139237 (-) 456 WP_011080885.1 molybdopterin synthase catalytic subunit MoaE -
  OO986_RS09920 (VV208B2_18330) moaD 2139239..2139484 (-) 246 WP_011080886.1 molybdopterin synthase sulfur carrier subunit -
  OO986_RS09925 (VV208B2_18340) moaC 2139481..2139960 (-) 480 WP_011080887.1 cyclic pyranopterin monophosphate synthase MoaC -
  OO986_RS09930 (VV208B2_18350) moaB 2139971..2140483 (-) 513 WP_011080888.1 molybdenum cofactor biosynthesis protein B -
  OO986_RS09935 (VV208B2_18360) moaA 2140564..2141553 (-) 990 WP_039553216.1 GTP 3',8-cyclase MoaA -
  OO986_RS09940 (VV208B2_18370) - 2141869..2142759 (+) 891 WP_011080890.1 YvcK family protein -
  OO986_RS09945 (VV208B2_18380) luxU 2142860..2143207 (-) 348 WP_011080891.1 quorum-sensing phosphorelay protein LuxU -
  OO986_RS09950 (VV208B2_18390) luxO 2143207..2144607 (-) 1401 WP_011149911.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OO986_RS09955 (VV208B2_18400) uvrB 2144881..2146911 (-) 2031 WP_013572115.1 excinuclease ABC subunit UvrB -
  OO986_RS09960 (VV208B2_18410) - 2147010..2147195 (-) 186 WP_011080894.1 hypothetical protein -
  OO986_RS09970 (VV208B2_18430) rsxA 2147793..2148371 (+) 579 WP_011080895.1 electron transport complex subunit RsxA -
  OO986_RS09975 (VV208B2_18440) rsxB 2148373..2148969 (+) 597 WP_011080896.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52120.68 Da        Isoelectric Point: 6.2540

>NTDB_id=96377 OO986_RS09950 WP_011149911.1 2143207..2144607(-) (luxO) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
MQQITTTKQRYLLMVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASHP
DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNDADSAGSQNYQGFIGSSQKMQQVYRTI
DSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRER
GEDVIEIAYSLLGYMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNVVVLNNGKEITMEMLPPPLNQPFERKES
VQPDLSELISVRDICPLWLTEKLAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWNEKEEKQKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=96377 OO986_RS09950 WP_011149911.1 2143207..2144607(-) (luxO) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
ATGCAACAAATAACGACAACGAAACAGCGCTACTTGCTGATGGTAGAAGACACCGCTTCTGTCGCAGCACTCTATCGCTC
CTATCTCATGCCATTGGGTATCGATATCAATATCGTGGGTACTGGGCGTGACGCGATAGACAGTTTAAAACATCGCATTC
CAGATCTTATTCTGCTGGATTTACGTCTACCGGACATGACGGGAATGGACGTATTGCATGCAGTGAAAGCAAGTCACCCT
GATGTTCCTATCATTTTCATGACCGCACACGGCTCGATCGATACTGCCGTTGAAGCTATGCGACATGGGTCTCAGGATTT
TCTTATCAAGCCATGCGAAGCGGATCGCTTGAGGGTCACGGTAAACAACGCTATCCGCAAAGCGAGCAAATTGAAGAATG
ATGCGGACAGTGCAGGCAGCCAAAATTATCAAGGCTTTATCGGCAGTAGCCAAAAAATGCAGCAGGTTTATCGCACCATT
GACTCCGCGGCGAGCAGTAAAGCAAGCATCTTTATCACAGGTGAAAGTGGTACAGGTAAAGAGGTGTGCGCAGAAGCCAT
TCATGCGGCCAGTCGACGTGGAGACAAGCCATTTATCGCGATTAACTGTGCTGCAATTCCCAAGGATTTGATTGAAAGCG
AGCTATTTGGTCATGTCAAAGGTGCGTTTACCGGCGCTGCGACCGATCGCCAAGGGGCGGCAGAGCTCGCTGATGGGGGC
ACACTTTTCCTGGATGAGCTGTGTGAAATGGACTTGGATCTGCAAACAAAATTGCTGCGTTTTATCCAAACGGGTACTTT
CCAAAAAGTAGGCTCTTCAAAAATGAAGAGTGTTGACGTGCGTTTTGTGTGCGCGACAAACCGAGACCCCTGGAAAGAGG
TACAAGAAGGGCGCTTTCGTGAAGATTTGTACTACCGACTTTATGTGATTCCACTGCACTTGCCACCACTTCGTGAACGT
GGAGAGGATGTCATCGAGATCGCTTACTCGTTACTGGGTTACATGTCACACGAGGAAGGGAAAAACTTTGTTCGTTTCTC
TCAACCTGTGATAGATAGATTTAACGAATATGAGTGGCCAGGTAATGTGCGTCAGTTACAAAATGTGCTGCGTAATGTCG
TGGTTCTTAACAACGGTAAAGAGATTACCATGGAGATGCTGCCGCCTCCTTTGAACCAGCCCTTTGAACGCAAAGAAAGT
GTGCAGCCTGATCTGAGTGAGTTGATTTCCGTCAGGGATATTTGTCCATTGTGGTTGACAGAGAAACTGGCGATTGAACA
AGCGATCAAAGCGTGTGATGGTAACATTCCGAGAGCCGCTGGCTATCTGGATGTCAGCCCGTCAACGATTTATCGCAAGT
TACAGGCGTGGAACGAAAAAGAAGAAAAACAGAAAGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)

Response regulator receiver domain (Response_reg)

(13-121)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

85.714

96.137

0.824

Multiple sequence alignment