Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OO986_RS08570 Genome accession   NZ_AP026552
Coordinates   1835821..1837242 (+) Length   473 a.a.
NCBI ID   WP_013571949.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1830821..1842242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO986_RS08545 (VV208B2_15670) cobC 1831504..1832142 (-) 639 WP_108693902.1 alpha-ribazole phosphatase -
  OO986_RS08550 (VV208B2_15680) cobU 1832152..1832712 (-) 561 WP_045620120.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  OO986_RS08555 (VV208B2_15690) - 1832715..1833482 (-) 768 WP_072603082.1 adenosylcobinamide-GDP ribazoletransferase -
  OO986_RS08560 (VV208B2_15700) cobT 1833484..1834512 (-) 1029 WP_108693903.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  OO986_RS08565 (VV208B2_15710) - 1835049..1835747 (+) 699 WP_013571948.1 oxidoreductase -
  OO986_RS08570 (VV208B2_15720) sbcB 1835821..1837242 (+) 1422 WP_013571949.1 exodeoxyribonuclease I Machinery gene
  OO986_RS08575 (VV208B2_15730) - 1837288..1837659 (+) 372 WP_043877143.1 CidA/LrgA family protein -
  OO986_RS08580 (VV208B2_15740) - 1837662..1838339 (+) 678 WP_011080628.1 LrgB family protein -
  OO986_RS08585 (VV208B2_15750) - 1838652..1839044 (+) 393 WP_011080629.1 SulA-like leucine-rich domain-containing protein -
  OO986_RS08590 (VV208B2_15760) - 1839247..1840350 (+) 1104 WP_011080630.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  OO986_RS08595 (VV208B2_15770) - 1840424..1840828 (-) 405 WP_045623665.1 hypothetical protein -
  OO986_RS08600 (VV208B2_15780) - 1841067..1841834 (-) 768 WP_011080632.1 phospholipase A -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54727.96 Da        Isoelectric Point: 5.1722

>NTDB_id=96373 OO986_RS08570 WP_013571949.1 1835821..1837242(+) (sbcB) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
MQQDNQPSFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAAN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=96373 OO986_RS08570 WP_013571949.1 1835821..1837242(+) (sbcB) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
ATGCAGCAAGACAATCAGCCCTCTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGTCCAGCAAAAGATCGCCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCACTCATTACCGGAATTACGCCACAAAAAGCGCAGAAAGAAGGCTTACCCGAGCCA
GAATTTATCGCAAAAATCCACGCAGAGTTGTCGCGTCCGAACACCACTAGCCTCGGCTACAACAGTATTCGCTTCGATGA
CGAAGTCACGCGTTACACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCTGTGGCCAATGGCATTGAACACAGTAACGCCCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGCTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGTGAATGCCAATAC
ACCAGTTGGATAGTGCCGTTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTTGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACTCGTCATGATGAGCTCGGCGATTTATTGCCTG
TGCCAGTTAAACTGGTGCATTTGAATAAGTGCCCAATTTTAGCACCAGCCAAAACCCTCACTGCGGAGAATGCCGCCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCACCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTCGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACGCACCTTGCCGCTTTGGACATCACGTTTAACGATAAACGC
ATCGAGCCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.508

99.789

0.803

Multiple sequence alignment