Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NSQ16_RS14195 Genome accession   NZ_CP150155
Coordinates   2720956..2721702 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus sp. PS108     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2715956..2726702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ16_RS14170 (NSQ16_14170) mreC 2716362..2717234 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  NSQ16_RS14175 (NSQ16_14175) mreB 2717265..2718278 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  NSQ16_RS14180 (NSQ16_14180) radC 2718370..2719065 (-) 696 WP_003246034.1 DNA repair protein RadC -
  NSQ16_RS14185 (NSQ16_14185) - 2719102..2719671 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  NSQ16_RS14190 (NSQ16_14190) spoIIB 2719824..2720822 (-) 999 WP_015714459.1 stage II sporulation protein SpoIIB -
  NSQ16_RS14195 (NSQ16_14195) comC 2720956..2721702 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  NSQ16_RS14200 (NSQ16_14200) - 2721842..2723134 (-) 1293 WP_015714460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NSQ16_RS14205 (NSQ16_14205) valS 2723194..2725836 (-) 2643 WP_015714461.1 valine--tRNA ligase -
  NSQ16_RS14210 (NSQ16_14210) - 2726284..2726475 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=963680 NSQ16_RS14195 WP_072592551.1 2720956..2721702(-) (comC) [Bacillus sp. PS108]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=963680 NSQ16_RS14195 WP_072592551.1 2720956..2721702(-) (comC) [Bacillus sp. PS108]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996