Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NSQ16_RS12665 Genome accession   NZ_CP150155
Coordinates   2460704..2461471 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus sp. PS108     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2455704..2466471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ16_RS12645 (NSQ16_12645) - 2455878..2456690 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  NSQ16_RS12650 (NSQ16_12650) ccpN 2456716..2457354 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  NSQ16_RS12655 (NSQ16_12655) glyS 2457487..2459526 (-) 2040 WP_024572413.1 glycine--tRNA ligase subunit beta -
  NSQ16_RS12660 (NSQ16_12660) glyQ 2459519..2460406 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  NSQ16_RS12665 (NSQ16_12665) recO 2460704..2461471 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  NSQ16_RS12670 (NSQ16_12670) - 2461508..2461651 (-) 144 WP_003230053.1 YqzL family protein -
  NSQ16_RS12675 (NSQ16_12675) era 2461799..2462704 (-) 906 WP_024572411.1 GTPase Era -
  NSQ16_RS12680 (NSQ16_12680) - 2462685..2463095 (-) 411 WP_003230049.1 cytidine deaminase -
  NSQ16_RS12685 (NSQ16_12685) - 2463214..2463585 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  NSQ16_RS12690 (NSQ16_12690) ybeY 2463566..2464039 (-) 474 WP_339232212.1 rRNA maturation RNase YbeY -
  NSQ16_RS12695 (NSQ16_12695) pgpH 2464040..2466175 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=963672 NSQ16_RS12665 WP_014477369.1 2460704..2461471(-) (recO) [Bacillus sp. PS108]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=963672 NSQ16_RS12665 WP_014477369.1 2460704..2461471(-) (recO) [Bacillus sp. PS108]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTTTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCACAAACGGCAAGGCTGTTAAGACTCTTCTACTATTTTGATTTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996