Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   NSQ16_RS12365 Genome accession   NZ_CP150155
Coordinates   2409355..2409738 (-) Length   127 a.a.
NCBI ID   WP_076458111.1    Uniprot ID   -
Organism   Bacillus sp. PS108     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2404355..2414738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ16_RS12325 (NSQ16_12325) sinI 2405289..2405462 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  NSQ16_RS12330 (NSQ16_12330) sinR 2405496..2405831 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NSQ16_RS12335 (NSQ16_12335) tasA 2405924..2406709 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  NSQ16_RS12340 (NSQ16_12340) - 2406773..2407345 (-) 573 WP_003230181.1 signal peptidase I -
  NSQ16_RS12345 (NSQ16_12345) tapA 2407329..2408090 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  NSQ16_RS12350 (NSQ16_12350) - 2408362..2408688 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NSQ16_RS12355 (NSQ16_12355) - 2408730..2408909 (-) 180 WP_003230176.1 YqzE family protein -
  NSQ16_RS12360 (NSQ16_12360) comGG 2408980..2409354 (-) 375 WP_273796674.1 ComG operon protein ComGG Machinery gene
  NSQ16_RS12365 (NSQ16_12365) comGF 2409355..2409738 (-) 384 WP_076458111.1 ComG operon protein ComGF Machinery gene
  NSQ16_RS12370 (NSQ16_12370) comGE 2409764..2410111 (-) 348 WP_063335293.1 ComG operon protein 5 Machinery gene
  NSQ16_RS12375 (NSQ16_12375) comGD 2410095..2410526 (-) 432 WP_080529538.1 comG operon protein ComGD Machinery gene
  NSQ16_RS12380 (NSQ16_12380) comGC 2410516..2410812 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  NSQ16_RS12385 (NSQ16_12385) comGB 2410826..2411863 (-) 1038 WP_072175548.1 comG operon protein ComGB Machinery gene
  NSQ16_RS12390 (NSQ16_12390) comGA 2411850..2412920 (-) 1071 WP_015714258.1 competence protein ComGA Machinery gene
  NSQ16_RS12395 (NSQ16_12395) - 2413148..2413330 (-) 183 WP_116316544.1 hypothetical protein -
  NSQ16_RS12400 (NSQ16_12400) corA 2413332..2414285 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14448.54 Da        Isoelectric Point: 6.2135

>NTDB_id=963666 NSQ16_RS12365 WP_076458111.1 2409355..2409738(-) (comGF) [Bacillus sp. PS108]
MLISGSLAAIFHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFDIYHSMIRKRVDG
KGHVPILDHITAMKADFENGVVLLKIESEDQKVYQTAFPVYSYLGGR

Nucleotide


Download         Length: 384 bp        

>NTDB_id=963666 NSQ16_RS12365 WP_076458111.1 2409355..2409738(-) (comGF) [Bacillus sp. PS108]
TTGCTCATATCAGGATCGTTAGCTGCGATTTTCCATCTGTTTTTATCTCGACAGCAGGAACATGACGGTTTCACACAGCA
AGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGACAAGACATCCGTTTTGACATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCAATTTTAGATCATATTACTGCCATGAAAGCTGATTTTGAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAGGACCAAAAAGTGTATCAAACAGCTTTTCCAGTCTATTCGTATTTAGGAGGGAGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

98.413

99.213

0.976