Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NSQ16_RS12135 Genome accession   NZ_CP150155
Coordinates   2370866..2371669 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus sp. PS108     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2365866..2376669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ16_RS12110 (NSQ16_12110) - 2367013..2367744 (-) 732 WP_069703866.1 glycerophosphodiester phosphodiesterase -
  NSQ16_RS12115 (NSQ16_12115) - 2367823..2368443 (-) 621 WP_080477816.1 N-acetylmuramoyl-L-alanine amidase -
  NSQ16_RS12120 (NSQ16_12120) - 2368458..2368751 (-) 294 WP_003230284.1 lipoprotein -
  NSQ16_RS12125 (NSQ16_12125) - 2369059..2369211 (+) 153 WP_014480226.1 hypothetical protein -
  NSQ16_RS12130 (NSQ16_12130) - 2369284..2370402 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  NSQ16_RS12135 (NSQ16_12135) spo0A 2370866..2371669 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  NSQ16_RS12140 (NSQ16_12140) spoIVB 2371945..2373225 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  NSQ16_RS12145 (NSQ16_12145) recN 2373400..2375130 (-) 1731 WP_014477300.1 DNA repair protein RecN Machinery gene
  NSQ16_RS12150 (NSQ16_12150) argR 2375167..2375616 (-) 450 WP_003230265.1 arginine repressor ArgR -
  NSQ16_RS12155 (NSQ16_12155) - 2375714..2376559 (-) 846 WP_160245701.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=963661 NSQ16_RS12135 WP_003226427.1 2370866..2371669(-) (spo0A) [Bacillus sp. PS108]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=963661 NSQ16_RS12135 WP_003226427.1 2370866..2371669(-) (spo0A) [Bacillus sp. PS108]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAAAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCGGCACATATAAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTAGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGCTGTTCGGCTATACCGTC
AGCATGACAAAAGCTAAACCTACCAACAGCGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1