Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NSQ16_RS11155 Genome accession   NZ_CP150155
Coordinates   2194772..2195392 (+) Length   206 a.a.
NCBI ID   WP_015714153.1    Uniprot ID   A0A8E0VT51
Organism   Bacillus sp. PS108     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2189772..2200392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ16_RS11115 (NSQ16_11115) - 2190903..2191409 (-) 507 WP_230488223.1 PTS glucose transporter subunit IIA -
  NSQ16_RS11120 (NSQ16_11120) - 2191547..2191966 (+) 420 WP_015714150.1 Hsp20/alpha crystallin family protein -
  NSQ16_RS11125 (NSQ16_11125) - 2191987..2192364 (-) 378 WP_014477159.1 YppG family protein -
  NSQ16_RS11130 (NSQ16_11130) - 2192552..2192740 (+) 189 WP_003230690.1 YppF family protein -
  NSQ16_RS11135 (NSQ16_11135) - 2192779..2193150 (-) 372 WP_015714151.1 YppE family protein -
  NSQ16_RS11140 (NSQ16_11140) - 2193196..2193441 (-) 246 WP_015251831.1 YppD family protein -
  NSQ16_RS11145 (NSQ16_11145) sspM 2193640..2193744 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  NSQ16_RS11150 (NSQ16_11150) - 2193769..2194731 (-) 963 WP_230488224.1 DUF2515 domain-containing protein -
  NSQ16_RS11155 (NSQ16_11155) recU 2194772..2195392 (+) 621 WP_015714153.1 Holliday junction resolvase RecU Machinery gene
  NSQ16_RS11160 (NSQ16_11160) - 2195414..2198164 (+) 2751 WP_230488225.1 PBP1A family penicillin-binding protein -
  NSQ16_RS11165 (NSQ16_11165) - 2198240..2198734 (-) 495 WP_009967579.1 YpoC family protein -
  NSQ16_RS11170 (NSQ16_11170) nth 2198731..2199390 (-) 660 WP_009967580.1 endonuclease III -
  NSQ16_RS11175 (NSQ16_11175) dnaD 2199409..2200107 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23915.08 Da        Isoelectric Point: 9.7224

>NTDB_id=963660 NSQ16_RS11155 WP_015714153.1 2194772..2195392(+) (recU) [Bacillus sp. PS108]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHAHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=963660 NSQ16_RS11155 WP_015714153.1 2194772..2195392(+) (recU) [Bacillus sp. PS108]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACTTCTTTCCCCCTGCAGAATTTTCATGCCCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995