Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NSQ16_RS10345 Genome accession   NZ_CP150155
Coordinates   2062984..2064114 (+) Length   376 a.a.
NCBI ID   WP_134982820.1    Uniprot ID   -
Organism   Bacillus sp. PS108     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2046797..2069495 2062984..2064114 within 0


Gene organization within MGE regions


Location: 2046797..2069495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ16_RS10215 (NSQ16_10215) - 2046797..2047036 (-) 240 WP_003231362.1 TM2 domain-containing protein -
  NSQ16_RS10220 (NSQ16_10220) - 2047207..2047545 (+) 339 WP_029318062.1 helix-turn-helix domain-containing protein -
  NSQ16_RS10225 (NSQ16_10225) - 2047595..2049193 (-) 1599 WP_230488195.1 hypothetical protein -
  NSQ16_RS10230 (NSQ16_10230) - 2049235..2049693 (-) 459 WP_069837551.1 DUF4365 domain-containing protein -
  NSQ16_RS10235 (NSQ16_10235) - 2049730..2049963 (-) 234 WP_230488196.1 3-ketosteroid-delta-1-dehydrogenase -
  NSQ16_RS10240 (NSQ16_10240) - 2050378..2050509 (-) 132 WP_043857647.1 hypothetical protein -
  NSQ16_RS10245 (NSQ16_10245) - 2050520..2050742 (-) 223 Protein_1963 hypothetical protein -
  NSQ16_RS10250 (NSQ16_10250) - 2050746..2050997 (-) 252 WP_033881213.1 hypothetical protein -
  NSQ16_RS10255 (NSQ16_10255) - 2051366..2052793 (-) 1428 WP_033881218.1 serine hydrolase domain-containing protein -
  NSQ16_RS10260 (NSQ16_10260) - 2052927..2053157 (+) 231 WP_033881214.1 membrane protein -
  NSQ16_RS10265 (NSQ16_10265) - 2053167..2053559 (-) 393 WP_033881215.1 UPF0715 family protein -
  NSQ16_RS10270 (NSQ16_10270) - 2053604..2053825 (-) 222 WP_116315615.1 hypothetical protein -
  NSQ16_RS10275 (NSQ16_10275) - 2053863..2054216 (-) 354 WP_069837923.1 hypothetical protein -
  NSQ16_RS10280 (NSQ16_10280) - 2054335..2054897 (-) 563 Protein_1970 DUF3885 domain-containing protein -
  NSQ16_RS10285 (NSQ16_10285) - 2055071..2055297 (-) 227 Protein_1971 helix-turn-helix transcriptional regulator -
  NSQ16_RS10290 (NSQ16_10290) - 2055389..2055826 (-) 438 WP_230488197.1 hypothetical protein -
  NSQ16_RS10295 (NSQ16_10295) - 2055921..2056379 (-) 459 WP_116316657.1 UPF0715 family protein -
  NSQ16_RS10300 (NSQ16_10300) - 2056896..2057450 (-) 555 WP_230488198.1 hypothetical protein -
  NSQ16_RS10305 (NSQ16_10305) - 2057967..2058323 (+) 357 WP_230488199.1 hypothetical protein -
  NSQ16_RS10310 (NSQ16_10310) - 2058545..2059219 (+) 675 WP_230488200.1 SOS response-associated peptidase -
  NSQ16_RS10315 (NSQ16_10315) - 2059289..2059388 (+) 100 Protein_1977 ATP-dependent DNA ligase -
  NSQ16_RS10320 (NSQ16_10320) - 2059481..2060398 (-) 918 WP_230488201.1 hypothetical protein -
  NSQ16_RS10325 (NSQ16_10325) - 2060463..2060630 (-) 168 Protein_1979 hypothetical protein -
  NSQ16_RS10330 (NSQ16_10330) - 2060774..2060998 (+) 225 Protein_1980 hypothetical protein -
  NSQ16_RS10335 (NSQ16_10335) - 2061534..2061908 (+) 375 WP_230488202.1 YoqO family protein -
  NSQ16_RS10340 (NSQ16_10340) - 2062710..2062850 (+) 141 WP_134982818.1 phage holin -
  NSQ16_RS10345 (NSQ16_10345) rapC 2062984..2064114 (+) 1131 WP_134982820.1 tetratricopeptide repeat protein Regulator
  NSQ16_RS10350 (NSQ16_10350) - 2064104..2064247 (+) 144 WP_153801665.1 hypothetical protein -
  NSQ16_RS10355 (NSQ16_10355) - 2064401..2064601 (-) 201 WP_021481449.1 hypothetical protein -
  NSQ16_RS10360 (NSQ16_10360) - 2064824..2064996 (-) 173 Protein_1986 hypothetical protein -
  NSQ16_RS10365 (NSQ16_10365) - 2064991..2065146 (-) 156 Protein_1987 T7SS effector LXG polymorphic toxin -
  NSQ16_RS10370 (NSQ16_10370) - 2065245..2065802 (-) 558 WP_029318053.1 SMI1/KNR4 family protein -
  NSQ16_RS10375 (NSQ16_10375) - 2065931..2067367 (+) 1437 WP_131227505.1 flavin monoamine oxidase family protein -
  NSQ16_RS10380 (NSQ16_10380) csaA 2067615..2067947 (-) 333 WP_230488203.1 chaperone CsaA -
  NSQ16_RS10385 (NSQ16_10385) - 2068012..2068737 (-) 726 WP_122895469.1 helix-turn-helix domain-containing protein -
  NSQ16_RS10390 (NSQ16_10390) - 2068752..2069495 (-) 744 WP_122895470.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44366.13 Da        Isoelectric Point: 5.7041

>NTDB_id=963659 NSQ16_RS10345 WP_134982820.1 2062984..2064114(+) (rapC) [Bacillus sp. PS108]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIKSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=963659 NSQ16_RS10345 WP_134982820.1 2062984..2064114(+) (rapC) [Bacillus sp. PS108]
ATGGAGCAATTAATTCCGTCATCCACAGTAGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAAGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(221-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.383

100

0.457