Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NSQ16_RS08650 Genome accession   NZ_CP150155
Coordinates   1654606..1655499 (+) Length   297 a.a.
NCBI ID   WP_230488505.1    Uniprot ID   -
Organism   Bacillus sp. PS108     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1649606..1660499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ16_RS08630 (NSQ16_08630) - 1650276..1652006 (+) 1731 WP_230488506.1 hypothetical protein -
  NSQ16_RS08635 (NSQ16_08635) - 1652003..1652284 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  NSQ16_RS08640 (NSQ16_08640) sucC 1652457..1653614 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  NSQ16_RS08645 (NSQ16_08645) sucD 1653643..1654545 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  NSQ16_RS08650 (NSQ16_08650) dprA 1654606..1655499 (+) 894 WP_230488505.1 DNA-processing protein DprA Machinery gene
  NSQ16_RS08655 (NSQ16_08655) topA 1655687..1657762 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  NSQ16_RS08660 (NSQ16_08660) trmFO 1657838..1659145 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSQ16_RS08665 (NSQ16_08665) xerC 1659213..1660127 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32919.26 Da        Isoelectric Point: 9.9142

>NTDB_id=963655 NSQ16_RS08650 WP_230488505.1 1654606..1655499(+) (dprA) [Bacillus sp. PS108]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQFYPKLPRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLLKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPDTKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=963655 NSQ16_RS08650 WP_230488505.1 1654606..1655499(+) (dprA) [Bacillus sp. PS108]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAATTTTATCCAAAGCTCCCGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTTGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGATACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.99

100

0.99
  dprA Legionella pneumophila strain ERS1305867

38.462

100

0.387
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377