Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NSQ16_RS05530 Genome accession   NZ_CP150155
Coordinates   1073175..1073753 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus sp. PS108     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1068175..1078753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ16_RS05510 (NSQ16_05510) hemAT 1068686..1069984 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  NSQ16_RS05515 (NSQ16_05515) - 1070123..1071652 (-) 1530 WP_327837760.1 FAD-dependent oxidoreductase -
  NSQ16_RS05520 (NSQ16_05520) - 1071764..1072621 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  NSQ16_RS05525 (NSQ16_05525) - 1072649..1072882 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  NSQ16_RS05530 (NSQ16_05530) comK 1073175..1073753 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  NSQ16_RS05535 (NSQ16_05535) - 1073800..1074699 (-) 900 WP_076457899.1 SDR family oxidoreductase -
  NSQ16_RS05540 (NSQ16_05540) - 1074916..1075185 (+) 270 WP_160221475.1 excalibur calcium-binding domain-containing protein -
  NSQ16_RS05545 (NSQ16_05545) - 1075228..1076697 (-) 1470 WP_122895185.1 sodium:solute symporter -
  NSQ16_RS05550 (NSQ16_05550) - 1076694..1076894 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  NSQ16_RS05555 (NSQ16_05555) - 1077093..1077464 (-) 372 WP_160221476.1 hypothetical protein -
  NSQ16_RS05560 (NSQ16_05560) - 1077616..1078239 (+) 624 WP_010886465.1 VTT domain-containing protein -
  NSQ16_RS05565 (NSQ16_05565) lepB 1078241..1078747 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=963640 NSQ16_RS05530 WP_003245329.1 1073175..1073753(+) (comK) [Bacillus sp. PS108]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=963640 NSQ16_RS05530 WP_003245329.1 1073175..1073753(+) (comK) [Bacillus sp. PS108]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1