Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NSU15_RS26090 Genome accession   NZ_CP150154
Coordinates   5812226..5813986 (+) Length   586 a.a.
NCBI ID   WP_339288089.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL E2-0201     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5807226..5818986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU15_RS26070 (NSU15_26070) - 5808071..5808742 (+) 672 WP_076120943.1 response regulator transcription factor -
  NSU15_RS26075 (NSU15_26075) - 5808739..5809818 (+) 1080 WP_339288083.1 HAMP domain-containing sensor histidine kinase -
  NSU15_RS26080 (NSU15_26080) - 5809815..5810300 (+) 486 WP_339288085.1 GNAT family N-acetyltransferase -
  NSU15_RS26085 (NSU15_26085) rcrP 5810469..5812226 (+) 1758 WP_339288087.1 ABC transporter ATP-binding protein Regulator
  NSU15_RS26090 (NSU15_26090) rcrQ 5812226..5813986 (+) 1761 WP_339288089.1 ABC transporter ATP-binding protein Regulator
  NSU15_RS26095 (NSU15_26095) - 5814633..5815451 (-) 819 WP_339288091.1 RNA methyltransferase -
  NSU15_RS26100 (NSU15_26100) - 5815854..5816537 (-) 684 WP_331281342.1 TrkA family potassium uptake protein -
  NSU15_RS26105 (NSU15_26105) - 5816701..5816937 (+) 237 WP_042130985.1 small acid-soluble spore protein SspI -
  NSU15_RS26110 (NSU15_26110) - 5817036..5818634 (-) 1599 WP_076120940.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64124.36 Da        Isoelectric Point: 6.6139

>NTDB_id=963614 NSU15_RS26090 WP_339288089.1 5812226..5813986(+) (rcrQ) [Paenibacillus sp. FSL E2-0201]
MKIKNKSQNTWSKLLRYCRKYVPVIVIALICAAAGTVLTLFGPDKLSEITDKITAGLVSGIDMDGITAIGITLVVIYGVG
ALLSLSQGLIMSNITQKVSKKLRTDLAHKMNKLPISYYNKSATGDILSRVTNDVDTIGQALNQSIGTVVTAVAMFIGSII
MMLRTNVIMTITAVVATIIGFGLMAIIMKKSQKYFASQQEYLGKINGHVEEVYTGHNVVKAYNGEAQMRTTFQELNQGLK
NSAFKAQFLSGLMPPLMGFIGNLGFVAVCVVGAVLAMNGTISFGVIVAFIMYVRYFTQPLSQIAQAAQNLQSASAAGGRV
FEFLEAEEMEDESLKERTLATAEGKVRFDQVQFAYETSEKLIIKNFSADVKPGQKVAIVGPTGAGKTTLVNLLIRFNELT
GGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIKENLIYNQQNITDEKLEEACKAVGLHRFIQTLSDGYNTILNDK
VNLSAGQKQQLTIARAMLKDAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKDGDILE
SGSHAELLAQNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=963614 NSU15_RS26090 WP_339288089.1 5812226..5813986(+) (rcrQ) [Paenibacillus sp. FSL E2-0201]
ATGAAGATTAAGAATAAGAGTCAGAATACATGGAGCAAGCTGCTCCGTTACTGCCGCAAGTATGTTCCAGTGATCGTAAT
TGCGCTAATCTGCGCGGCGGCTGGAACGGTACTCACGTTATTCGGTCCGGATAAGCTCTCCGAGATCACCGACAAGATTA
CAGCCGGCCTCGTCAGCGGCATCGATATGGACGGCATTACTGCCATTGGCATTACCCTCGTCGTGATCTACGGCGTCGGC
GCGTTATTATCACTCTCGCAAGGCTTGATCATGTCGAATATTACCCAAAAAGTCTCCAAGAAATTAAGAACCGACCTGGC
TCATAAAATGAACAAACTCCCGATCTCCTACTACAACAAGTCGGCAACCGGGGATATTCTCTCCCGGGTTACCAACGATG
TGGATACCATCGGTCAGGCTCTCAATCAGAGCATCGGTACTGTAGTGACCGCTGTCGCAATGTTCATCGGTTCCATTATC
ATGATGCTCCGGACCAATGTGATCATGACCATCACCGCTGTCGTTGCAACTATCATCGGCTTCGGTCTTATGGCGATCAT
CATGAAGAAATCGCAAAAGTATTTTGCCAGTCAGCAGGAATATTTGGGCAAAATCAATGGTCATGTTGAAGAAGTGTACA
CAGGGCATAACGTGGTAAAAGCATATAACGGGGAAGCGCAGATGCGCACTACCTTCCAGGAATTGAATCAAGGGCTGAAG
AACAGCGCCTTCAAAGCGCAATTCCTCTCTGGACTGATGCCACCGCTTATGGGCTTCATTGGTAATCTAGGCTTTGTCGC
CGTCTGTGTCGTGGGTGCTGTATTAGCCATGAATGGTACGATTTCATTCGGGGTCATTGTCGCCTTCATCATGTATGTAC
GGTACTTCACCCAGCCGTTGTCTCAGATCGCCCAAGCCGCACAGAATTTGCAATCGGCATCCGCCGCTGGAGGGCGTGTA
TTTGAATTCCTAGAGGCTGAAGAAATGGAAGACGAGAGCTTGAAAGAACGCACGCTGGCAACTGCTGAAGGCAAAGTACG
TTTTGATCAAGTACAATTTGCATATGAGACTTCAGAGAAGCTGATTATCAAAAACTTCTCGGCAGACGTAAAGCCCGGGC
AAAAAGTTGCCATAGTAGGACCTACCGGTGCAGGGAAGACCACTCTCGTTAATCTGCTCATCCGCTTCAACGAATTAACA
GGCGGAGAAATTTACATTGATGATACGCCGATCAGCAGCCTTACGAGAGAGAACATTCATGATCTATTCTGTATGGTCCT
GCAGGATACCTGGCTGTTTGAGGGTACCATCAAAGAGAACCTGATTTACAATCAGCAGAATATAACAGACGAGAAGCTTG
AAGAAGCCTGCAAGGCTGTTGGCCTGCACCGCTTCATTCAAACCTTAAGTGATGGTTACAATACTATCCTTAATGATAAG
GTCAATTTATCCGCCGGCCAAAAGCAGCAGCTGACCATCGCTCGCGCGATGCTAAAGGATGCGCCGATGCTCATTCTTGA
TGAAGCTACAAGCTCGGTGGATACCCGTACAGAGCTGCTGATTCAGCAGGCGATGGATAAGCTTATGGAAGGCAGAACCT
CTTTCGTTATCGCACACCGACTCTCAACGATCAAGAATGCCGATGTGATTCTGGTCCTGAAGGACGGCGATATCTTGGAA
AGCGGCAGCCACGCGGAATTACTTGCACAGAACGGATTCTATGCAGAGCTATATAACAGCCAATTTGAACAGGCTTCTTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(26-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.529

99.317

0.561