Detailed information NTG0096361

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OO986_RS02920
• Genome accession: NZ_AP026552
• Coordinates: 607488..608480 (+)
• Length: 330 a.a.
• NCBI ID: WP_045596855.1
• Uniprot ID: A0AAN1PM43
• Organism: Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 602488..613480

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OO986_RS02885 (VV208B2_05090)	ftsB	602519..602800 (+)	282	WP_011079514.1	cell division protein FtsB	-
OO986_RS02890 (VV208B2_05100)	ispD	602800..603513 (+)	714	WP_045622076.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OO986_RS02895 (VV208B2_05110)	ispF	603510..603986 (+)	477	WP_011151152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OO986_RS02900 (VV208B2_05120)	truD	604022..605065 (+)	1044	WP_011079517.1	tRNA pseudouridine(13) synthase TruD	-
OO986_RS02905 (VV208B2_05130)	surE	605071..605838 (+)	768	WP_011079518.1	5'/3'-nucleotidase SurE	-
OO986_RS02910 (VV208B2_05140)	-	605841..606467 (+)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OO986_RS02915 (VV208B2_05150)	-	606511..607407 (+)	897	WP_039554645.1	peptidoglycan DD-metalloendopeptidase family protein	-
OO986_RS02920 (VV208B2_05160)	rpoS	607488..608480 (+)	993	WP_045596855.1	RNA polymerase sigma factor RpoS	Regulator
OO986_RS02925 (VV208B2_05170)	mutS	608556..611117 (-)	2562	WP_108693955.1	DNA mismatch repair protein MutS	-
OO986_RS02930 (VV208B2_05180)	pncC	611201..611704 (+)	504	WP_108693954.1	nicotinamide-nucleotide amidase	-
OO986_RS02935 (VV208B2_05190)	recA	611838..612887 (+)	1050	WP_011079524.1	recombinase RecA	Machinery gene
OO986_RS02940 (VV208B2_05200)	recX	612991..613452 (+)	462	WP_264922362.1	recombination regulator RecX	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38041.08 Da
• Isoelectric Point: 4.4791

>NTDB_id=96361 OO986_RS02920 WP_045596855.1 607488..608480(+) (rpoS) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
MSISNTVTKVKDFDVNQMDDDFNDDIEINEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLEIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=96361 OO986_RS02920 WP_045596855.1 607488..608480(+) (rpoS) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATTTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATTAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACACAGCTCTATCTAGGAGAAATTGGTTTTTCTCCACTATTAACCGCAGAAGAAGAAGTTCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCAGCACGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCTCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGCGCGGTAGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCAACTTACGCGACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAACTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGAGATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGTTCTGTCGATACACCGATTGGTGGAGATGGAGAGAAGGCGTTATTGGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGTTATGAGCCTTCAACACTGGAAGAGGTTGGGCAAGAGATTGGTT
TAACTCGCGAGCGAGTACGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAATTTGTTTGATATAGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70 region 2 (Sigma70_r2) (91-160)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.602	100	0.833