Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSU15_RS22795 Genome accession   NZ_CP150154
Coordinates   5045993..5046418 (+) Length   141 a.a.
NCBI ID   WP_339291428.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL E2-0201     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5040993..5051418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU15_RS22765 (NSU15_22765) - 5041728..5041886 (+) 159 WP_339287630.1 hypothetical protein -
  NSU15_RS22770 (NSU15_22770) - 5041889..5042224 (-) 336 WP_042130171.1 YolD-like family protein -
  NSU15_RS22775 (NSU15_22775) - 5042600..5043160 (-) 561 WP_339287631.1 hypothetical protein -
  NSU15_RS22780 (NSU15_22780) - 5043279..5043767 (+) 489 WP_076117213.1 PH domain-containing protein -
  NSU15_RS22785 (NSU15_22785) - 5043826..5045301 (-) 1476 WP_339287632.1 glycosyl hydrolase -
  NSU15_RS22790 (NSU15_22790) - 5045469..5045885 (-) 417 WP_076117456.1 cytidine deaminase -
  NSU15_RS22795 (NSU15_22795) nucA/comI 5045993..5046418 (+) 426 WP_339291428.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSU15_RS22800 (NSU15_22800) - 5046498..5046644 (-) 147 WP_156114850.1 hypothetical protein -
  NSU15_RS22805 (NSU15_22805) - 5046795..5046971 (+) 177 WP_076098563.1 YjfB family protein -
  NSU15_RS22810 (NSU15_22810) - 5047122..5047655 (+) 534 WP_339291430.1 ImmA/IrrE family metallo-endopeptidase -
  NSU15_RS22815 (NSU15_22815) - 5047705..5047896 (+) 192 WP_339287634.1 hypothetical protein -
  NSU15_RS22820 (NSU15_22820) - 5048020..5048190 (-) 171 WP_339287635.1 hypothetical protein -
  NSU15_RS22825 (NSU15_22825) - 5048268..5048600 (+) 333 WP_339287636.1 DUF3139 domain-containing protein -
  NSU15_RS22830 (NSU15_22830) - 5048780..5049274 (+) 495 WP_339287637.1 sigma-70 family RNA polymerase sigma factor -
  NSU15_RS22835 (NSU15_22835) - 5049271..5050260 (+) 990 WP_339287638.1 hypothetical protein -
  NSU15_RS22840 (NSU15_22840) - 5050543..5050890 (+) 348 WP_042130183.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15809.58 Da        Isoelectric Point: 4.2352

>NTDB_id=963607 NSU15_RS22795 WP_339291428.1 5045993..5046418(+) (nucA/comI) [Paenibacillus sp. FSL E2-0201]
MQKLLTSLIIVVLLALGGYWYEQNEDPASPTSDSEVVQLIFPSDRYPETAKHIQDAIAKGESATCTINREQAEENRKESL
RGIPTKKGYDRDEWPMAMCDEGGEGADIEYITPKDNRGAGSWVGNQLEDYADGTRVEFMFK

Nucleotide


Download         Length: 426 bp        

>NTDB_id=963607 NSU15_RS22795 WP_339291428.1 5045993..5046418(+) (nucA/comI) [Paenibacillus sp. FSL E2-0201]
ATACAGAAATTACTCACCAGTCTCATCATTGTTGTGTTACTCGCTTTGGGCGGTTACTGGTATGAACAGAACGAAGACCC
GGCATCCCCCACATCCGATTCAGAAGTTGTTCAGCTCATCTTCCCATCAGATCGTTATCCTGAGACCGCCAAGCATATTC
AGGATGCGATTGCCAAAGGGGAGTCTGCCACATGTACCATTAACCGTGAGCAGGCTGAAGAGAACCGCAAAGAATCCTTA
AGAGGGATCCCTACCAAAAAAGGCTACGACCGCGACGAATGGCCCATGGCCATGTGTGATGAAGGCGGCGAAGGGGCCGA
CATTGAATACATAACGCCAAAAGATAATCGCGGTGCAGGAAGCTGGGTTGGTAATCAGCTAGAAGATTATGCGGATGGAA
CCCGCGTAGAATTTATGTTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.932

73.05

0.504