Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | NSS98_RS22820 | Genome accession | NZ_CP150152 |
| Coordinates | 5147051..5147482 (+) | Length | 143 a.a. |
| NCBI ID | WP_036683407.1 | Uniprot ID | A0A1R0X267 |
| Organism | Paenibacillus sp. FSL E2-0274 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 5133957..5153214 | 5147051..5147482 | within | 0 |
Gene organization within MGE regions
Location: 5133957..5153214
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSS98_RS22740 (NSS98_22740) | - | 5133957..5134844 (-) | 888 | WP_076315988.1 | sugar ABC transporter permease | - |
| NSS98_RS22745 (NSS98_22745) | - | 5135683..5136738 (-) | 1056 | WP_076315990.1 | LacI family DNA-binding transcriptional regulator | - |
| NSS98_RS22750 (NSS98_22750) | - | 5136863..5138107 (-) | 1245 | WP_076315991.1 | hypothetical protein | - |
| NSS98_RS22755 (NSS98_22755) | - | 5138484..5138873 (+) | 390 | WP_076315992.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| NSS98_RS22760 (NSS98_22760) | - | 5138943..5139152 (+) | 210 | WP_076315993.1 | helix-turn-helix domain-containing protein | - |
| NSS98_RS22765 (NSS98_22765) | - | 5139642..5139911 (+) | 270 | WP_076315994.1 | helix-turn-helix domain-containing protein | - |
| NSS98_RS22770 (NSS98_22770) | - | 5139989..5141194 (+) | 1206 | WP_076315995.1 | site-specific integrase | - |
| NSS98_RS22780 (NSS98_22780) | - | 5141608..5142048 (-) | 441 | WP_036683335.1 | WGxxGxxG family protein | - |
| NSS98_RS22785 (NSS98_22785) | - | 5142124..5142810 (-) | 687 | WP_036683338.1 | M15 family metallopeptidase | - |
| NSS98_RS22790 (NSS98_22790) | - | 5142928..5143092 (+) | 165 | WP_169744799.1 | hypothetical protein | - |
| NSS98_RS22795 (NSS98_22795) | - | 5143089..5143424 (-) | 336 | WP_076142249.1 | YolD-like family protein | - |
| NSS98_RS22800 (NSS98_22800) | - | 5143639..5144199 (-) | 561 | WP_076098564.1 | hypothetical protein | - |
| NSS98_RS22805 (NSS98_22805) | - | 5144317..5144805 (+) | 489 | WP_036683346.1 | PH domain-containing protein | - |
| NSS98_RS22810 (NSS98_22810) | - | 5144879..5146354 (-) | 1476 | WP_038572819.1 | glycosyl hydrolase | - |
| NSS98_RS22815 (NSS98_22815) | - | 5146528..5146944 (-) | 417 | WP_038572821.1 | cytidine deaminase | - |
| NSS98_RS22820 (NSS98_22820) | nucA/comI | 5147051..5147482 (+) | 432 | WP_036683407.1 | NucA/NucB deoxyribonuclease domain-containing protein | Machinery gene |
| NSS98_RS22825 (NSS98_22825) | - | 5147564..5147713 (-) | 150 | WP_155288175.1 | hypothetical protein | - |
| NSS98_RS22830 (NSS98_22830) | - | 5147863..5148039 (+) | 177 | WP_076098563.1 | YjfB family protein | - |
| NSS98_RS22835 (NSS98_22835) | - | 5148203..5148754 (+) | 552 | WP_076142253.1 | ImmA/IrrE family metallo-endopeptidase | - |
| NSS98_RS22840 (NSS98_22840) | - | 5148821..5148982 (+) | 162 | WP_155288176.1 | hypothetical protein | - |
| NSS98_RS22845 (NSS98_22845) | - | 5149066..5149212 (-) | 147 | WP_170914301.1 | hypothetical protein | - |
| NSS98_RS22850 (NSS98_22850) | - | 5149322..5149657 (+) | 336 | WP_036683354.1 | hypothetical protein | - |
| NSS98_RS22855 (NSS98_22855) | - | 5150103..5150597 (+) | 495 | WP_036683356.1 | sigma-70 family RNA polymerase sigma factor | - |
| NSS98_RS22860 (NSS98_22860) | - | 5150594..5151583 (+) | 990 | WP_036683358.1 | hypothetical protein | - |
| NSS98_RS22865 (NSS98_22865) | - | 5151670..5151861 (+) | 192 | WP_076142250.1 | hypothetical protein | - |
| NSS98_RS22870 (NSS98_22870) | - | 5152540..5153214 (+) | 675 | WP_036683363.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 143 a.a. Molecular weight: 15898.68 Da Isoelectric Point: 4.3968
>NTDB_id=963539 NSS98_RS22820 WP_036683407.1 5147051..5147482(+) (nucA/comI) [Paenibacillus sp. FSL E2-0274]
MKKWISSLIIVALLALASYWFEQNGEPTDPSSPSNSSVVQLTFPSDRYPETAKHIQDAIAKGESATCTINREQAEENRKE
SLKGIPTKKGYDRDEWPMAMCEEGGVGADIEYITPSDNRGAGSWVGNQLEDYADGTRVEFMFK
MKKWISSLIIVALLALASYWFEQNGEPTDPSSPSNSSVVQLTFPSDRYPETAKHIQDAIAKGESATCTINREQAEENRKE
SLKGIPTKKGYDRDEWPMAMCEEGGVGADIEYITPSDNRGAGSWVGNQLEDYADGTRVEFMFK
Nucleotide
Download Length: 432 bp
>NTDB_id=963539 NSS98_RS22820 WP_036683407.1 5147051..5147482(+) (nucA/comI) [Paenibacillus sp. FSL E2-0274]
GTGAAAAAATGGATCTCCAGTCTCATCATTGTTGCATTACTTGCTTTGGCTAGTTACTGGTTTGAACAAAACGGAGAGCC
TACAGACCCCTCGTCTCCATCCAATTCGAGTGTTGTTCAGCTAACCTTCCCATCAGACCGCTATCCTGAGACCGCCAAGC
ATATTCAGGATGCCATTGCGAAAGGTGAATCCGCCACATGTACGATTAACCGAGAGCAGGCTGAAGAGAACCGCAAAGAG
TCCTTAAAAGGGATCCCTACTAAAAAGGGATATGACCGGGATGAATGGCCAATGGCTATGTGTGAGGAAGGCGGCGTTGG
TGCCGACATTGAATACATAACGCCAAGCGATAACCGCGGGGCAGGAAGCTGGGTTGGCAATCAGCTGGAGGATTATGCAG
ACGGAACCCGGGTGGAATTTATGTTTAAATAA
GTGAAAAAATGGATCTCCAGTCTCATCATTGTTGCATTACTTGCTTTGGCTAGTTACTGGTTTGAACAAAACGGAGAGCC
TACAGACCCCTCGTCTCCATCCAATTCGAGTGTTGTTCAGCTAACCTTCCCATCAGACCGCTATCCTGAGACCGCCAAGC
ATATTCAGGATGCCATTGCGAAAGGTGAATCCGCCACATGTACGATTAACCGAGAGCAGGCTGAAGAGAACCGCAAAGAG
TCCTTAAAAGGGATCCCTACTAAAAAGGGATATGACCGGGATGAATGGCCAATGGCTATGTGTGAGGAAGGCGGCGTTGG
TGCCGACATTGAATACATAACGCCAAGCGATAACCGCGGGGCAGGAAGCTGGGTTGGCAATCAGCTGGAGGATTATGCAG
ACGGAACCCGGGTGGAATTTATGTTTAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
68.932 |
72.028 |
0.497 |