Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NSS98_RS15250 Genome accession   NZ_CP150152
Coordinates   3475660..3477420 (-) Length   586 a.a.
NCBI ID   WP_036677200.1    Uniprot ID   A0A1R0X3U5
Organism   Paenibacillus sp. FSL E2-0274     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3470660..3482420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS98_RS15235 (NSS98_15235) - 3471996..3472955 (+) 960 WP_051490977.1 ABC transporter permease subunit -
  NSS98_RS15240 (NSS98_15240) - 3472969..3473904 (+) 936 WP_081383287.1 carbohydrate ABC transporter permease -
  NSS98_RS15245 (NSS98_15245) - 3473995..3475557 (+) 1563 WP_076141243.1 ABC transporter substrate-binding protein -
  NSS98_RS15250 (NSS98_15250) rcrQ 3475660..3477420 (-) 1761 WP_036677200.1 ABC transporter ATP-binding protein Regulator
  NSS98_RS15255 (NSS98_15255) rcrP 3477420..3479171 (-) 1752 WP_036677198.1 ABC transporter ATP-binding protein Regulator
  NSS98_RS15260 (NSS98_15260) - 3479291..3480346 (-) 1056 WP_081383663.1 HAMP domain-containing sensor histidine kinase -
  NSS98_RS15265 (NSS98_15265) - 3480343..3481017 (-) 675 WP_036677195.1 response regulator transcription factor -
  NSS98_RS15270 (NSS98_15270) - 3481342..3482307 (+) 966 WP_036677191.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64511.79 Da        Isoelectric Point: 6.5784

>NTDB_id=963534 NSS98_RS15250 WP_036677200.1 3475660..3477420(-) (rcrQ) [Paenibacillus sp. FSL E2-0274]
MNKSKEQLNTWSKLLHYCRKYIPVVLIAIISAAIGTVLTLLGPDKLSEMTDLITAGLVTGIDMEAVTSIGLFLVFIYILS
AVLSLVQGLIMSAVTQKVSKNLRADLSRKMNKLPISYYNNSTTGDILSRVTNDVDTIGQALNQSVGTLVTALALFTGSII
MMFKTNVIMTITAVVATIIGFGLIAAIMKKSQKYFQSQQEYLGKINGHVEEVYTGHTVVKAYNGESQMRNTFESLNMNLK
DSAFKAQFLSGLMMPIMMFIGNLGFVAVCVVGAVLAMNGTISFGVIVAFILYVRYFTQPLSQIAQAAQSLQSASAASKRV
FEFLDADEMDNESHKERHLKTAVGKVDFEHVQFAYENSDKLVIKDFSAEIKPGQKIAIVGPTGAGKTTLINLLIRFNELK
GGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIRENLVYNKTGVTDKEVEDACKSVGLHHFIQTLSAGYNTILNDK
VNLSTGQKQQLTIARAMLKNAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKEGDILE
SGSHEELLAKNGFYAELYNSQFDQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=963534 NSS98_RS15250 WP_036677200.1 3475660..3477420(-) (rcrQ) [Paenibacillus sp. FSL E2-0274]
ATGAACAAAAGCAAAGAGCAACTCAACACGTGGAGCAAACTTCTCCACTATTGCAGAAAATATATCCCTGTAGTTCTTAT
AGCTATTATTAGTGCAGCAATCGGTACGGTTCTGACTCTGCTTGGACCGGATAAGCTTTCGGAGATGACAGACTTGATCA
CTGCGGGCCTCGTCACCGGTATTGATATGGAAGCAGTAACTTCTATCGGCCTTTTCCTTGTATTTATCTATATCCTTAGC
GCTGTGTTATCTTTGGTACAAGGATTAATTATGTCCGCAGTTACGCAAAAGGTCTCCAAAAACTTAAGAGCCGATCTCTC
ACGCAAAATGAACAAACTTCCGATCTCTTATTATAATAATTCTACAACCGGTGACATCCTGTCCCGGGTTACCAACGATG
TGGATACGATCGGGCAAGCTTTAAACCAAAGCGTCGGCACACTGGTAACTGCCCTTGCCCTCTTTACGGGATCCATCATC
ATGATGTTCAAAACAAATGTGATCATGACTATTACGGCGGTTGTTGCAACTATCATTGGCTTTGGCCTCATAGCGGCAAT
TATGAAAAAATCCCAAAAGTATTTTCAAAGTCAGCAAGAATACTTAGGGAAAATCAATGGCCATGTGGAGGAAGTATATA
CAGGACATACTGTAGTGAAAGCCTACAATGGTGAATCGCAAATGCGCAATACATTTGAATCCCTGAATATGAATCTTAAA
GATAGTGCATTTAAAGCGCAGTTCCTCTCCGGTCTTATGATGCCGATTATGATGTTTATAGGCAATCTAGGTTTTGTGGC
CGTTTGTGTAGTTGGTGCTGTACTTGCTATGAACGGAACGATATCCTTTGGGGTCATTGTAGCCTTTATACTGTATGTCC
GTTACTTTACACAACCGCTCTCTCAGATTGCTCAAGCCGCACAAAGTCTGCAATCGGCTTCCGCGGCAAGCAAACGTGTC
TTTGAGTTCCTCGATGCTGACGAAATGGACAATGAAAGTCATAAAGAAAGACATCTTAAAACTGCTGTGGGCAAAGTTGA
TTTTGAACATGTGCAATTTGCTTATGAAAATTCAGATAAACTTGTGATTAAAGATTTTTCTGCAGAGATTAAGCCTGGGC
AAAAAATTGCTATAGTCGGTCCTACCGGCGCAGGTAAAACTACACTGATAAATCTTCTAATACGGTTTAATGAATTAAAG
GGCGGAGAAATATATATTGATGATACCCCCATCAGCAGCTTAACAAGAGAAAACATCCATGATCTATTCTGTATGGTCTT
GCAGGACACCTGGCTTTTTGAGGGCACTATCAGAGAAAATCTAGTGTACAACAAAACAGGTGTAACCGATAAAGAAGTTG
AAGATGCTTGTAAGTCGGTAGGCTTGCATCATTTCATTCAGACCTTAAGTGCCGGTTATAATACCATACTAAATGACAAG
GTTAATTTATCCACGGGCCAAAAGCAACAGCTTACGATCGCCCGCGCGATGCTCAAAAATGCCCCAATGCTCATCCTCGA
TGAAGCTACAAGCTCAGTCGATACAAGAACAGAGCTCTTGATTCAGCAGGCAATGGATAAGCTCATGGAGGGAAGAACCT
CTTTTGTTATTGCGCATAGACTCTCAACCATTAAGAACGCCGATGTAATTCTGGTTCTGAAGGAAGGCGATATCCTGGAA
AGCGGCAGCCACGAAGAACTACTTGCCAAAAATGGTTTTTATGCGGAGCTTTATAATAGCCAATTCGACCAAGCCTCTTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R0X3U5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.717

99.488

0.544