Detailed information NTG0963520

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACJEHI_RS04145
• Genome accession: NZ_CP174230
• Coordinates: 929445..930470 (-)
• Length: 341 a.a.
• NCBI ID: WP_015444568.1
• Uniprot ID: Q9S4T1
• Organism: Legionella pneumophila strain SPF634
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 924445..935470

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJEHI_RS04120 (ACJEHI_04120)	-	925713..926033 (-)	321	WP_010947020.1	hypothetical protein	-
ACJEHI_RS04125 (ACJEHI_04125)	ruvA	926083..926682 (-)	600	WP_010947019.1	Holliday junction branch migration protein RuvA	-
ACJEHI_RS04130 (ACJEHI_04130)	ruvC	926679..927203 (-)	525	WP_010947018.1	crossover junction endodeoxyribonuclease RuvC	-
ACJEHI_RS04135 (ACJEHI_04135)	-	927203..927946 (-)	744	WP_010947017.1	YebC/PmpR family DNA-binding transcriptional regulator	-
ACJEHI_RS04140 (ACJEHI_04140)	hmgA	928092..929342 (+)	1251	WP_010947016.1	homogentisate 1,2-dioxygenase	-
ACJEHI_RS04145 (ACJEHI_04145)	rpoS	929445..930470 (-)	1026	WP_015444568.1	RNA polymerase sigma factor RpoS	Regulator
ACJEHI_RS04150 (ACJEHI_04150)	-	930565..931299 (-)	735	WP_408069185.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACJEHI_RS04155 (ACJEHI_04155)	surE	931318..932073 (-)	756	WP_010947013.1	5'/3'-nucleotidase SurE	-
ACJEHI_RS04160 (ACJEHI_04160)	-	932076..932459 (-)	384	WP_010947012.1	hypothetical protein	-
ACJEHI_RS04165 (ACJEHI_04165)	-	932539..934263 (+)	1725	WP_010947011.1	NAD-dependent malic enzyme	-
ACJEHI_RS04170 (ACJEHI_04170)	-	934311..934682 (-)	372	WP_010947010.1	protease inhibitor I42 family protein	-
ACJEHI_RS04175 (ACJEHI_04175)	-	934719..935036 (-)	318	WP_010947009.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39449.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=963520 ACJEHI_RS04145 WP_015444568.1 929445..930470(-) (rpoS) [Legionella pneumophila strain SPF634]
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=963520 ACJEHI_RS04145 WP_015444568.1 929445..930470(-) (rpoS) [Legionella pneumophila strain SPF634]
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

3D structure

• AlphaFold DB: Q9S4T1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548