Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NSS87_RS28225 Genome accession   NZ_CP150151
Coordinates   6336631..6337998 (-) Length   455 a.a.
NCBI ID   WP_042131247.1    Uniprot ID   A0A089IPD8
Organism   Paenibacillus sp. FSL F4-0243     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6331631..6342998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS87_RS28200 (NSS87_28200) ispF 6332191..6332679 (-) 489 WP_042192203.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  NSS87_RS28205 (NSS87_28205) ispD 6332676..6333374 (-) 699 WP_339243642.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NSS87_RS28210 (NSS87_28210) - 6333470..6334558 (-) 1089 WP_042131244.1 PIN/TRAM domain-containing protein -
  NSS87_RS28215 (NSS87_28215) pssA 6334738..6335475 (-) 738 WP_042192208.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  NSS87_RS28220 (NSS87_28220) disA 6335540..6336616 (-) 1077 WP_042131246.1 DNA integrity scanning diadenylate cyclase DisA -
  NSS87_RS28225 (NSS87_28225) radA 6336631..6337998 (-) 1368 WP_042131247.1 DNA repair protein RadA Machinery gene
  NSS87_RS28230 (NSS87_28230) clpC 6338191..6340659 (-) 2469 WP_042131248.1 ATP-dependent protease ATP-binding subunit ClpC -
  NSS87_RS28235 (NSS87_28235) - 6340695..6341759 (-) 1065 WP_042192210.1 protein arginine kinase -
  NSS87_RS28240 (NSS87_28240) - 6341788..6342312 (-) 525 WP_042192214.1 UvrB/UvrC motif-containing protein -
  NSS87_RS28245 (NSS87_28245) - 6342343..6342804 (-) 462 WP_042131251.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49666.49 Da        Isoelectric Point: 6.5864

>NTDB_id=963511 NSS87_RS28225 WP_042131247.1 6336631..6337998(-) (radA) [Paenibacillus sp. FSL F4-0243]
MAKPKTKFFCTDCGYESPKWFGKCPGCQAWNSMVEETESVVKTQGMNAPIFHSKEKAQSIISIESDKEPRILTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGLRVLYISGEESVRQTKLRADRLGALSAELYVLCETNMESIEEA
IEQIQPQFLVIDSIQTVFMPEVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEVGLTEVENPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALIAATHFPS
PRRVCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAIDLAVAVSIASSFRDISTKPYDVFFGEVGLTGE
VRGVSRAEMRVKEAAKLGFRRVIMPEKSLKGWKHPQDIQIIGVSTVADALSVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=963511 NSS87_RS28225 WP_042131247.1 6336631..6337998(-) (radA) [Paenibacillus sp. FSL F4-0243]
ATGGCTAAACCAAAAACTAAATTTTTTTGCACCGATTGTGGATACGAATCGCCAAAATGGTTCGGAAAATGTCCCGGGTG
CCAAGCTTGGAACTCCATGGTGGAGGAAACGGAAAGCGTAGTCAAAACACAGGGAATGAATGCCCCTATTTTTCATAGTA
AAGAAAAGGCACAATCGATCATAAGTATAGAAAGTGACAAGGAACCGCGCATACTGACAGGTATAGGTGAGCTTAACCGT
GTTCTCGGTGGGGGGATCGTGCCAGGATCGCTGGTACTAGTAGGGGGAGACCCAGGAATCGGTAAATCTACGCTCTTATT
ACAGACGTCGCATGCTCTGACAACTCAGGGATTGCGAGTGCTGTACATTTCGGGCGAAGAATCGGTAAGGCAAACAAAAC
TACGTGCGGATCGCCTCGGTGCGTTGTCAGCTGAGCTATATGTACTATGTGAGACGAATATGGAAAGCATAGAAGAAGCG
ATTGAACAAATTCAGCCGCAATTTCTTGTTATCGATTCGATTCAGACTGTATTTATGCCAGAAGTAACTAGTGCGCCAGG
CAGTGTGACCCAGGTTCGGGAATGTACGACAAGATTTATGCGTATCGCTAAGATTCGGGGAATTGCTACAGTTCTCGTTG
GGCATGTCACCAAGGAAGGCGCTATTGCAGGCCCACGGATGCTTGAACATATGGTGGATTGTGTGCTGTATTTTGAGGGA
GAGCGGCATCATACGTATAGACTCCTGCGGGCTGTAAAGAACCGCTTCGGTTCAACGAATGAAATCGGCATTTTCGAAAT
GGGTGAAGTGGGTCTAACAGAAGTAGAAAATCCATCGGAGCTCTTCTTATCTGAGCGTCCACTCGGCGTAGCCGGATCTA
CAGTCGTGGCTAGTATGGAAGGGACTAGACCGGTGCTTGTTGAGCTTCAGGCTCTTATCGCTGCCACTCATTTCCCCTCC
CCACGCCGGGTGTGCACAGGTATGGATCACCAGCGGATGGCACTCATTATCGCTGTACTTGAGAAGCGGATGGGCATGTT
CCTGCAAAATCAGGATGCATACCTTAATGTTGCTGGAGGAGTGAAGCTGGATGAACCGGCGATTGATTTAGCAGTAGCTG
TTAGTATCGCTTCCAGCTTTCGTGATATTTCAACAAAACCTTACGATGTTTTCTTCGGTGAAGTAGGACTTACAGGTGAA
GTAAGAGGTGTTTCACGCGCGGAAATGCGTGTGAAGGAGGCCGCGAAGCTAGGCTTCCGGCGGGTGATCATGCCAGAGAA
AAGTTTGAAGGGCTGGAAGCACCCGCAAGATATCCAGATTATTGGCGTCAGTACCGTAGCAGATGCACTATCGGTCGCGT
TAGATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(77-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089IPD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.449

100

0.67
  radA Streptococcus pneumoniae Rx1

58.889

98.901

0.582
  radA Streptococcus pneumoniae D39

58.889

98.901

0.582
  radA Streptococcus pneumoniae R6

58.889

98.901

0.582
  radA Streptococcus pneumoniae TIGR4

58.889

98.901

0.582
  radA Streptococcus mitis NCTC 12261

58.889

98.901

0.582
  radA Streptococcus mitis SK321

58.889

98.901

0.582