Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NSS87_RS26495 Genome accession   NZ_CP150151
Coordinates   5989949..5991706 (+) Length   585 a.a.
NCBI ID   WP_339243474.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL F4-0243     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5984949..5996706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS87_RS26475 (NSS87_26475) ascB 5985237..5986649 (-) 1413 WP_042191730.1 6-phospho-beta-glucosidase -
  NSS87_RS26480 (NSS87_26480) - 5986763..5987746 (+) 984 WP_042191732.1 LacI family DNA-binding transcriptional regulator -
  NSS87_RS26485 (NSS87_26485) - 5987825..5988496 (+) 672 WP_042191734.1 response regulator transcription factor -
  NSS87_RS26490 (NSS87_26490) - 5988493..5989572 (+) 1080 WP_339243473.1 HAMP domain-containing sensor histidine kinase -
  NSS87_RS26495 (NSS87_26495) rcrP 5989949..5991706 (+) 1758 WP_339243474.1 ABC transporter ATP-binding protein Regulator
  NSS87_RS26500 (NSS87_26500) rcrQ 5991706..5993466 (+) 1761 WP_339243475.1 ABC transporter ATP-binding protein Regulator
  NSS87_RS26505 (NSS87_26505) - 5993539..5994327 (-) 789 WP_042194519.1 RNA methyltransferase -
  NSS87_RS26510 (NSS87_26510) - 5994588..5995247 (-) 660 WP_042191745.1 TrkA family potassium uptake protein -
  NSS87_RS26515 (NSS87_26515) - 5995384..5995620 (+) 237 WP_042191747.1 small acid-soluble spore protein SspI -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64460.95 Da        Isoelectric Point: 5.2868

>NTDB_id=963508 NSS87_RS26495 WP_339243474.1 5989949..5991706(+) (rcrP) [Paenibacillus sp. FSL F4-0243]
MLKLLKNLEPKEWFLFGISLMFIIAQVWLDLELPDYMSDITRLIQTPGSEMNEILFAGGWMLLCALGSLATSVVVAGIAA
RIAADLSARLRSKLFDKVQSFSMEEISNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWAILKISGKSWEWTLT
TGAAVALLVVIVAVCIVLVLPKFKKLQLLTDNLNRVSRENLNGLRVIRAYNAEEYQEQKFAVANNELTSTNLFANNVMTL
LMPSITLIMSGLSLSIYWVGAVLIQAAEGTAKMGLFSDMIVFSSYAMQVVMAFMMLIMIFILLPRAQVSAKRINEVLDTV
PSLKNGSVTQFPVKREDEIEFKGVSFKYPDAEEYVLENISFTAKQGETVAFIGSTGCGKSTLVNLIPRFYDATEGEVLVN
GINVKKYDQQALRNKMGYVSQKAVLFGGTVSSNIAFGENGSGQVLSSDIVDAVYTSQSSEFVEKLEGNYDAHIAQGGTNL
SGGQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKDAHDSTMLIVAQRIGTIKDADKIIVLEAGRIAGMGT
HDELMQSCDVYQEIAYSQLTKEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=963508 NSS87_RS26495 WP_339243474.1 5989949..5991706(+) (rcrP) [Paenibacillus sp. FSL F4-0243]
ATGTTGAAATTACTCAAGAATCTGGAACCCAAAGAATGGTTCTTATTCGGTATCAGTCTCATGTTCATTATCGCTCAAGT
CTGGCTGGATTTAGAACTGCCTGACTACATGAGTGATATTACCCGGCTGATCCAGACACCAGGAAGCGAAATGAATGAAA
TCCTTTTCGCAGGCGGTTGGATGCTACTCTGTGCTCTTGGCAGTCTGGCGACCTCGGTTGTTGTAGCGGGCATTGCTGCA
AGAATAGCAGCCGATTTGTCTGCAAGATTGCGTTCCAAATTGTTCGATAAGGTACAATCCTTTTCGATGGAGGAGATCAG
TAACTTCTCAACAGCCAGTCTAATTACCCGTTCCACGAATGACATCACGCAAGTACAAATGCTGATTGTGATCGGCTTAC
AGCTACTTGTGAAAGCACCCATCCTCGCAGTGTGGGCGATACTCAAGATTTCGGGCAAAAGCTGGGAGTGGACTCTTACG
ACAGGTGCCGCGGTCGCATTGCTAGTAGTTATTGTCGCAGTCTGTATCGTGCTCGTCCTGCCGAAATTTAAAAAGCTGCA
GCTGCTTACAGATAATCTGAATCGTGTATCCAGAGAGAATCTTAACGGTCTTCGTGTCATCCGGGCGTATAATGCCGAGG
AATATCAAGAACAGAAGTTCGCTGTAGCTAACAACGAGCTTACCAGTACCAACCTATTTGCCAACAATGTGATGACCCTA
TTGATGCCGAGTATTACTTTGATTATGAGTGGACTCAGTCTCTCCATCTATTGGGTGGGTGCAGTGCTCATTCAAGCAGC
TGAGGGTACTGCCAAGATGGGCTTGTTCTCAGATATGATCGTATTCTCATCTTATGCCATGCAAGTGGTTATGGCCTTTA
TGATGCTGATTATGATCTTTATTCTACTGCCCCGTGCTCAAGTATCGGCTAAACGTATCAATGAAGTGCTAGACACAGTA
CCTAGCTTGAAGAATGGATCAGTAACTCAATTCCCTGTGAAGAGAGAAGATGAGATTGAATTCAAGGGGGTTAGCTTCAA
ATATCCAGATGCAGAGGAATATGTGTTGGAGAACATCAGCTTCACGGCGAAGCAGGGGGAGACGGTTGCTTTTATCGGAT
CTACAGGCTGCGGGAAAAGTACACTTGTTAACCTCATTCCCCGTTTCTATGATGCTACAGAAGGCGAAGTGCTGGTAAAT
GGTATTAATGTCAAGAAATACGACCAGCAAGCGCTGCGGAATAAAATGGGCTATGTCTCTCAGAAGGCTGTTCTATTTGG
CGGAACAGTGTCCTCCAATATTGCATTTGGTGAGAACGGATCCGGTCAGGTCCTCAGTTCAGATATTGTAGATGCGGTGT
ACACTTCCCAATCCTCTGAATTTGTAGAAAAGCTAGAGGGGAACTATGATGCCCATATCGCCCAAGGCGGTACGAATCTG
TCTGGCGGGCAAAAACAGCGGCTGTCGATTGCCAGAGCGATTGCCCGGCGTCCAGAAATATTAATCTTTGACGATTCTTT
CTCCGCGCTTGACTATAAGACTGACCGCAAACTGCGCAGTGAGCTTAAGAAAGACGCGCATGATTCAACGATGCTGATCG
TTGCACAGCGTATTGGTACGATTAAAGATGCCGACAAGATCATTGTGCTGGAAGCCGGACGAATCGCAGGTATGGGAACC
CATGACGAACTAATGCAGTCCTGCGACGTCTATCAGGAAATTGCTTATTCTCAGCTTACGAAGGAGGAGCTTGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.349

100

0.533