Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NSS87_RS26500 Genome accession   NZ_CP150151
Coordinates   5991706..5993466 (+) Length   586 a.a.
NCBI ID   WP_339243475.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL F4-0243     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5986706..5998466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS87_RS26480 (NSS87_26480) - 5986763..5987746 (+) 984 WP_042191732.1 LacI family DNA-binding transcriptional regulator -
  NSS87_RS26485 (NSS87_26485) - 5987825..5988496 (+) 672 WP_042191734.1 response regulator transcription factor -
  NSS87_RS26490 (NSS87_26490) - 5988493..5989572 (+) 1080 WP_339243473.1 HAMP domain-containing sensor histidine kinase -
  NSS87_RS26495 (NSS87_26495) rcrP 5989949..5991706 (+) 1758 WP_339243474.1 ABC transporter ATP-binding protein Regulator
  NSS87_RS26500 (NSS87_26500) rcrQ 5991706..5993466 (+) 1761 WP_339243475.1 ABC transporter ATP-binding protein Regulator
  NSS87_RS26505 (NSS87_26505) - 5993539..5994327 (-) 789 WP_042194519.1 RNA methyltransferase -
  NSS87_RS26510 (NSS87_26510) - 5994588..5995247 (-) 660 WP_042191745.1 TrkA family potassium uptake protein -
  NSS87_RS26515 (NSS87_26515) - 5995384..5995620 (+) 237 WP_042191747.1 small acid-soluble spore protein SspI -
  NSS87_RS26520 (NSS87_26520) - 5995719..5997317 (-) 1599 WP_042191749.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64070.32 Da        Isoelectric Point: 7.1379

>NTDB_id=963509 NSS87_RS26500 WP_339243475.1 5991706..5993466(+) (rcrQ) [Paenibacillus sp. FSL F4-0243]
MKTKNKGQNTWSKLLRYCRKYVPVIVIALICAAAGTVLTLFGPDKLSEITDKITAGLAGSIDMDGITTIGITLVIIYGVG
ALLSLSQGLIMSIITQKVSKKLRTDLAHKMNKLPISYYNKSATGDILSRVTNDVDTIGQSMNQSIGNVVTALAMFVGSIV
MMLKTNVIMTLTAIVATIIGFGLMVVIMKKSQKYFSSQQEYLGKINGHVEEVYTGHNVVKAYNGEAQMRTTFQELNQGLK
NSAFKAQFLSGLMPPLMGFIGNLGFVAVCIVGGVLAMNGTISFGVIVAFIMYVRYFTQPLSQIAQAAQSLQAASAAGGRV
FEFLEAEEMEDESHKENTLPTAKGKVKFDQVQFAYETSEKLIINNFSTDVKPGQKVAIVGPTGAGKTTLVNLLIRFNELT
GGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIKENLIYNQQNITDEKLIEACKSVGLHRFIKSLSDGYNTVLNDK
VNLSAGQKQQLTIARAMLKDAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKDGDILE
SGSHAELLAQNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=963509 NSS87_RS26500 WP_339243475.1 5991706..5993466(+) (rcrQ) [Paenibacillus sp. FSL F4-0243]
ATGAAAACCAAAAATAAAGGCCAGAATACATGGAGCAAGCTGCTCCGCTACTGCCGTAAATATGTTCCGGTTATTGTGAT
TGCGCTAATCTGCGCGGCAGCTGGAACGGTGCTCACGTTATTCGGCCCGGACAAACTCTCCGAGATCACCGACAAAATTA
CAGCTGGTCTTGCCGGCAGCATCGATATGGACGGCATTACTACCATTGGCATTACCCTCGTCATAATTTACGGCGTCGGT
GCGTTGTTGTCACTCTCGCAAGGCTTGATCATGTCGATTATTACCCAGAAGGTCTCGAAGAAATTAAGAACTGATCTGGC
TCATAAAATGAACAAACTTCCAATCTCCTACTATAATAAATCGGCCACAGGTGATATTTTATCCCGGGTAACGAATGATG
TAGATACCATCGGGCAATCGATGAATCAGAGTATTGGTAATGTCGTAACCGCCTTAGCTATGTTCGTCGGTTCGATCGTC
ATGATGCTGAAGACCAATGTAATTATGACCCTTACCGCTATCGTGGCAACGATCATCGGCTTTGGCCTTATGGTGGTCAT
TATGAAGAAATCGCAGAAATATTTTTCTAGCCAGCAGGAGTATTTAGGTAAAATCAACGGTCATGTCGAAGAAGTGTACA
CAGGACATAATGTAGTTAAAGCGTATAATGGCGAAGCGCAGATGCGCACTACCTTCCAGGAATTAAATCAGGGACTGAAG
AACAGCGCCTTCAAAGCACAATTCCTCTCTGGGCTGATGCCACCCCTGATGGGCTTTATTGGTAATCTTGGATTCGTTGC
CGTCTGTATCGTTGGAGGTGTACTCGCCATGAACGGTACGATTTCATTTGGGGTTATCGTCGCCTTCATTATGTATGTAC
GTTACTTTACCCAGCCGTTGTCTCAGATTGCCCAGGCCGCGCAGAGCCTGCAAGCTGCATCTGCAGCTGGCGGACGCGTG
TTCGAATTTCTGGAGGCTGAGGAAATGGAAGACGAGAGTCACAAAGAGAACACACTGCCAACTGCTAAAGGTAAAGTGAA
ATTTGACCAAGTACAATTTGCGTATGAGACTTCAGAAAAACTGATTATCAATAACTTTTCGACAGATGTAAAACCTGGGC
AAAAAGTGGCGATCGTTGGTCCTACCGGCGCAGGCAAAACTACGTTGGTCAATCTGCTCATCCGGTTCAACGAATTAACG
GGTGGAGAAATCTACATCGATGATACGCCGATCAGCAGCCTTACGAGAGAGAACATTCATGATCTGTTCTGTATGGTCCT
GCAGGATACCTGGCTGTTTGAGGGTACCATCAAAGAGAACCTGATTTACAATCAGCAGAACATTACAGACGAGAAGCTTA
TAGAGGCTTGCAAGTCCGTTGGCCTGCACCGCTTCATTAAATCCTTAAGTGACGGATACAACACCGTACTGAACGATAAA
GTTAATCTGTCCGCCGGACAAAAGCAGCAGCTGACCATCGCTCGCGCGATGCTGAAAGATGCGCCGATGCTCATTCTTGA
TGAAGCTACAAGCTCAGTGGATACCCGTACAGAGCTGCTGATTCAGCAGGCAATGGATAAGCTTATGGAAGGCAGAACCT
CTTTCGTTATCGCACACCGGCTCTCAACGATTAAGAATGCTGATGTGATTCTGGTCCTGAAGGACGGCGATATCTTGGAA
AGCGGCAGCCACGCAGAATTGCTGGCTCAGAACGGATTCTATGCAGAGCTCTACAATAGCCAGTTTGAGCAGGCTTCTTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(26-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.315

99.147

0.568