Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSS87_RS23390 Genome accession   NZ_CP150151
Coordinates   5252691..5253122 (+) Length   143 a.a.
NCBI ID   WP_339248645.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL F4-0243     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5247691..5258122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS87_RS23360 (NSS87_23360) - 5248390..5248554 (+) 165 WP_179085776.1 hypothetical protein -
  NSS87_RS23365 (NSS87_23365) - 5248551..5248886 (-) 336 WP_042130171.1 YolD-like family protein -
  NSS87_RS23370 (NSS87_23370) - 5249269..5249829 (-) 561 WP_339243088.1 hypothetical protein -
  NSS87_RS23375 (NSS87_23375) - 5249947..5250435 (+) 489 WP_339243090.1 PH domain-containing protein -
  NSS87_RS23380 (NSS87_23380) - 5250518..5251993 (-) 1476 WP_339243092.1 glycosyl hydrolase -
  NSS87_RS23385 (NSS87_23385) - 5252167..5252583 (-) 417 WP_339248644.1 cytidine deaminase -
  NSS87_RS23390 (NSS87_23390) nucA/comI 5252691..5253122 (+) 432 WP_339248645.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSS87_RS23395 (NSS87_23395) - 5253201..5253347 (-) 147 WP_156113170.1 hypothetical protein -
  NSS87_RS23400 (NSS87_23400) - 5253497..5253673 (+) 177 WP_076098563.1 YjfB family protein -
  NSS87_RS23405 (NSS87_23405) - 5253814..5254356 (+) 543 WP_231573332.1 ImmA/IrrE family metallo-endopeptidase -
  NSS87_RS23410 (NSS87_23410) - 5254433..5254594 (+) 162 WP_179085777.1 hypothetical protein -
  NSS87_RS23415 (NSS87_23415) - 5254718..5254888 (-) 171 WP_179086700.1 hypothetical protein -
  NSS87_RS23420 (NSS87_23420) - 5254999..5255331 (+) 333 WP_076299638.1 DUF3139 domain-containing protein -
  NSS87_RS23425 (NSS87_23425) - 5255508..5256002 (+) 495 WP_339243095.1 sigma-70 family RNA polymerase sigma factor -
  NSS87_RS23430 (NSS87_23430) - 5255999..5256988 (+) 990 WP_339243097.1 hypothetical protein -
  NSS87_RS23435 (NSS87_23435) - 5257325..5257828 (-) 504 WP_339243098.1 hypothetical protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15881.74 Da        Isoelectric Point: 4.4729

>NTDB_id=963502 NSS87_RS23390 WP_339248645.1 5252691..5253122(+) (nucA/comI) [Paenibacillus sp. FSL F4-0243]
MQKLLTSLIIIVLLALGGYWYEQNGDPSAPSSTSDSEVVQLIFPSDRYPETAKHIQDAIAKGESATCTINREQAEDNRKE
SLKGIPTKKGYDRDEWPMAMCNEGGKGADIEYITPKDNRGAGSWVGNQLEDYADGTRVEFMFK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=963502 NSS87_RS23390 WP_339248645.1 5252691..5253122(+) (nucA/comI) [Paenibacillus sp. FSL F4-0243]
ATACAGAAATTACTCACCAGTCTCATCATTATTGTGTTACTTGCTTTGGGCGGTTACTGGTATGAACAGAACGGAGATCC
GTCAGCCCCCTCGTCCACATCTGATTCAGAAGTTGTTCAGCTGATCTTCCCATCAGATCGTTATCCTGAGACTGCTAAGC
ACATTCAGGACGCGATTGCTAAAGGGGAGTCCGCGACGTGCACGATTAACCGTGAGCAGGCTGAAGACAACCGCAAAGAA
TCCTTAAAAGGGATCCCCACCAAAAAAGGCTACGACCGCGATGAATGGCCCATGGCCATGTGTAATGAAGGCGGCAAAGG
GGCCGACATTGAATACATAACCCCAAAAGATAACCGCGGCGCAGGAAGCTGGGTTGGCAATCAGTTAGAAGATTATGCGG
ATGGAACCCGCGTAGAATTTATGTTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.961

72.028

0.49