Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NSQ66_RS06155 Genome accession   NZ_CP150150
Coordinates   1396146..1397093 (+) Length   315 a.a.
NCBI ID   WP_076142171.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H3-0329     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1391146..1402093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ66_RS06125 (NSQ66_06125) - 1391462..1392427 (+) 966 WP_076142180.1 nitronate monooxygenase family protein -
  NSQ66_RS06130 (NSQ66_06130) - 1392512..1393606 (-) 1095 WP_076128106.1 Xaa-Pro peptidase family protein -
  NSQ66_RS06135 (NSQ66_06135) - 1393832..1394674 (+) 843 WP_076142168.1 SDR family oxidoreductase -
  NSQ66_RS06140 (NSQ66_06140) - 1394700..1395203 (+) 504 WP_076142169.1 GNAT family N-acetyltransferase -
  NSQ66_RS06145 (NSQ66_06145) - 1395221..1395565 (-) 345 WP_076128100.1 helix-turn-helix domain-containing protein -
  NSQ66_RS06150 (NSQ66_06150) - 1395657..1395917 (+) 261 WP_076142170.1 YqkE family protein -
  NSQ66_RS06155 (NSQ66_06155) ceuB 1396146..1397093 (+) 948 WP_076142171.1 ABC transporter permease Machinery gene
  NSQ66_RS06160 (NSQ66_06160) - 1397096..1398040 (+) 945 WP_076142172.1 iron chelate uptake ABC transporter family permease subunit -
  NSQ66_RS06165 (NSQ66_06165) - 1398034..1398789 (+) 756 WP_036681845.1 ABC transporter ATP-binding protein -
  NSQ66_RS06170 (NSQ66_06170) - 1398912..1399916 (+) 1005 WP_282579687.1 siderophore ABC transporter substrate-binding protein -
  NSQ66_RS06175 (NSQ66_06175) - 1400084..1400587 (+) 504 WP_036681849.1 sigma-70 family RNA polymerase sigma factor -
  NSQ66_RS06180 (NSQ66_06180) - 1400580..1401773 (+) 1194 WP_076142173.1 anti-sigma factor -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34534.75 Da        Isoelectric Point: 10.0525

>NTDB_id=963454 NSQ66_RS06155 WP_076142171.1 1396146..1397093(+) (ceuB) [Paenibacillus sp. FSL H3-0329]
MKLKYLSLLLIVFSFISLFIGVKDISPLDLFHLTESQVQTLLVSRIPRLAALIIAGVSMSIAGLIMQQLSRNKFVSPTTA
GTMDSAKFGILVSLMLFTGATPMQKLLVAFVFALLGTFIFMRILDRIKFKDSIFIPLVGLMFGNIVGSITTFFAYKNDLI
QNISSWMLGDFSTIIKGQYELIYISIPLVILAYLFANKFTVAGMGEDFSVNLGMNYKAVVNVGLVIVALISSVVILTVGT
IPFLGLVVPNIVTLYIGDNLKKSLAHTAILGAVFLLFCDILGRLIIYPYEISISLTVGVIGSGLFIYLLMRRKAN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=963454 NSQ66_RS06155 WP_076142171.1 1396146..1397093(+) (ceuB) [Paenibacillus sp. FSL H3-0329]
ATGAAACTAAAATATTTGTCCCTACTTCTAATAGTATTTTCATTTATATCTTTGTTTATAGGCGTTAAAGATATATCCCC
ATTAGATCTCTTTCATCTTACGGAATCTCAAGTACAGACCTTGCTGGTAAGCCGGATTCCCCGGTTAGCCGCATTGATTA
TCGCTGGAGTCAGCATGAGTATTGCCGGATTAATTATGCAACAGCTGTCACGCAATAAATTCGTCTCCCCGACTACGGCA
GGGACGATGGATTCCGCGAAATTTGGTATTCTCGTATCCCTCATGTTATTCACAGGCGCAACGCCAATGCAGAAATTGCT
GGTTGCTTTTGTTTTTGCACTATTGGGCACCTTTATTTTTATGAGAATCTTGGATCGGATCAAGTTCAAGGATAGTATTT
TTATCCCGCTGGTCGGACTCATGTTCGGCAACATTGTAGGCTCGATTACAACATTTTTTGCGTATAAAAATGATTTGATT
CAGAATATCTCGTCTTGGATGCTTGGAGATTTCTCAACGATTATCAAAGGCCAATACGAATTAATTTATATCAGCATTCC
ACTTGTCATTCTGGCGTATCTCTTCGCTAATAAATTTACGGTAGCCGGTATGGGCGAGGATTTCTCCGTTAATCTTGGCA
TGAATTACAAAGCGGTTGTCAACGTGGGATTGGTAATTGTAGCGTTAATCTCTTCTGTTGTCATTTTAACCGTAGGTACG
ATTCCATTTCTGGGTCTGGTAGTACCTAACATTGTAACGTTGTACATAGGAGATAACCTCAAAAAAAGTCTGGCGCATAC
AGCCATTCTCGGAGCGGTGTTCCTCCTGTTCTGCGATATTCTGGGCAGGCTCATTATCTATCCATATGAAATATCAATCA
GTCTCACGGTAGGCGTCATCGGTAGTGGTCTGTTTATCTACTTGCTGATGAGAAGAAAGGCGAACTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.051

99.683

0.559