Detailed information NTG0963447

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACJEHV_RS06225
• Genome accession: NZ_CP174229
• Coordinates: 1381005..1382030 (+)
• Length: 341 a.a.
• NCBI ID: WP_015444568.1
• Uniprot ID: Q9S4T1
• Organism: Legionella pneumophila strain SPF637
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1376005..1387030

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJEHV_RS06195 (ACJEHV_06195)	-	1376439..1376756 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
ACJEHV_RS06200 (ACJEHV_06200)	-	1376793..1377164 (+)	372	WP_010947010.1	protease inhibitor I42 family protein	-
ACJEHV_RS06205 (ACJEHV_06205)	-	1377212..1378936 (-)	1725	WP_010947011.1	NAD-dependent malic enzyme	-
ACJEHV_RS06210 (ACJEHV_06210)	-	1379016..1379399 (+)	384	WP_010947012.1	hypothetical protein	-
ACJEHV_RS06215 (ACJEHV_06215)	surE	1379402..1380157 (+)	756	WP_010947013.1	5'/3'-nucleotidase SurE	-
ACJEHV_RS06220 (ACJEHV_06220)	-	1380176..1380919 (+)	744	WP_010947014.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACJEHV_RS06225 (ACJEHV_06225)	rpoS	1381005..1382030 (+)	1026	WP_015444568.1	RNA polymerase sigma factor RpoS	Regulator
ACJEHV_RS06230 (ACJEHV_06230)	hmgA	1382133..1383383 (-)	1251	WP_010947016.1	homogentisate 1,2-dioxygenase	-
ACJEHV_RS06235 (ACJEHV_06235)	-	1383529..1384272 (+)	744	WP_010947017.1	YebC/PmpR family DNA-binding transcriptional regulator	-
ACJEHV_RS06240 (ACJEHV_06240)	ruvC	1384272..1384796 (+)	525	WP_010947018.1	crossover junction endodeoxyribonuclease RuvC	-
ACJEHV_RS06245 (ACJEHV_06245)	ruvA	1384793..1385392 (+)	600	WP_010947019.1	Holliday junction branch migration protein RuvA	-
ACJEHV_RS06250 (ACJEHV_06250)	-	1385442..1385762 (+)	321	WP_010947020.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39449.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=963447 ACJEHV_RS06225 WP_015444568.1 1381005..1382030(+) (rpoS) [Legionella pneumophila strain SPF637]
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=963447 ACJEHV_RS06225 WP_015444568.1 1381005..1382030(+) (rpoS) [Legionella pneumophila strain SPF637]
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

3D structure

• AlphaFold DB: Q9S4T1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548