Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NSQ90_RS06280 Genome accession   NZ_CP150149
Coordinates   1416986..1417933 (+) Length   315 a.a.
NCBI ID   WP_042125010.1    Uniprot ID   A0A089IDW0
Organism   Paenibacillus sp. FSL H7-0737     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1411986..1422933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ90_RS06255 (NSQ90_06255) - 1413280..1414374 (-) 1095 WP_042185648.1 Xaa-Pro peptidase family protein -
  NSQ90_RS06260 (NSQ90_06260) - 1414667..1415551 (+) 885 WP_042185650.1 SDR family oxidoreductase -
  NSQ90_RS06265 (NSQ90_06265) - 1415535..1416038 (+) 504 WP_042185652.1 GNAT family N-acetyltransferase -
  NSQ90_RS06270 (NSQ90_06270) - 1416057..1416401 (-) 345 WP_042185654.1 helix-turn-helix domain-containing protein -
  NSQ90_RS06275 (NSQ90_06275) - 1416511..1416753 (+) 243 WP_156113209.1 YqkE family protein -
  NSQ90_RS06280 (NSQ90_06280) ceuB 1416986..1417933 (+) 948 WP_042125010.1 ABC transporter permease Machinery gene
  NSQ90_RS06285 (NSQ90_06285) - 1417936..1418880 (+) 945 WP_042185658.1 iron chelate uptake ABC transporter family permease subunit -
  NSQ90_RS06290 (NSQ90_06290) - 1418874..1419629 (+) 756 WP_042185659.1 ABC transporter ATP-binding protein -
  NSQ90_RS06295 (NSQ90_06295) - 1419752..1420744 (+) 993 WP_269321807.1 siderophore ABC transporter substrate-binding protein -
  NSQ90_RS06300 (NSQ90_06300) - 1420919..1421422 (+) 504 WP_042185661.1 sigma-70 family RNA polymerase sigma factor -
  NSQ90_RS06305 (NSQ90_06305) - 1421415..1422608 (+) 1194 WP_042185662.1 anti-sigma factor -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34515.72 Da        Isoelectric Point: 10.0524

>NTDB_id=963420 NSQ90_RS06280 WP_042125010.1 1416986..1417933(+) (ceuB) [Paenibacillus sp. FSL H7-0737]
MKLKYLSLLLIVFSFISLFIGVKDISPLDLFSLTESQMQTLLVSRIPRLAALIIAGVSMSIAGLIMQQLSRNKFVSPTTA
GTMDSAKFGILVSLMLFTGATPMQKLLVAFVFALLGTFIFMRILDRIKFKDSIFIPLVGLMFGNIVGSITTFFAYKNDLV
QNISSWMLGDFSTIIKGQYELIYISIPLVILAYVFANKFTVAGMGEDFSVNLGMNYKAVVNVGLVIVALISSVVILTVGT
IPFLGLVVPNIVTLYIGDNLKKNLAHTAILGAVFLLFCDILGRLIIYPYEISISLTVGVIGSGLFIYLLMRRKAN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=963420 NSQ90_RS06280 WP_042125010.1 1416986..1417933(+) (ceuB) [Paenibacillus sp. FSL H7-0737]
ATGAAACTAAAATATTTGTCCCTACTTCTAATAGTATTCTCATTTATATCTTTGTTTATAGGCGTAAAAGACATTTCACC
TTTGGATCTTTTTTCGCTTACAGAATCTCAGATGCAGACTCTGTTAGTCAGCCGGATTCCACGCTTAGCTGCACTGATTA
TAGCTGGTGTAAGCATGAGTATTGCCGGATTAATTATGCAGCAATTATCACGGAATAAATTCGTTTCTCCCACTACGGCG
GGCACGATGGATTCCGCGAAATTCGGTATTCTCGTGTCCCTGATGCTGTTCACAGGGGCGACACCGATGCAGAAGCTACT
CGTTGCTTTTGTTTTTGCCCTACTGGGAACATTTATATTTATGAGAATCTTAGATCGGATCAAGTTCAAGGATAGTATTT
TTATCCCGCTGGTCGGACTCATGTTCGGGAACATTGTAGGCTCGATTACTACATTTTTTGCTTACAAAAATGATTTGGTT
CAGAATATCTCGTCTTGGATGCTTGGCGATTTCTCAACGATTATTAAGGGTCAATACGAATTAATCTATATCAGTATCCC
ACTTGTCATTCTTGCGTATGTTTTCGCCAATAAGTTCACCGTTGCCGGTATGGGGGAGGATTTCTCCGTCAATCTCGGTA
TGAACTACAAAGCGGTAGTGAACGTAGGATTGGTGATTGTAGCGTTAATCTCTTCAGTTGTTATTTTAACCGTAGGTACG
ATTCCATTCCTGGGTCTTGTTGTACCTAACATAGTAACGCTATACATAGGCGATAACTTGAAAAAAAATCTGGCGCATAC
TGCCATTCTCGGTGCGGTGTTCCTCCTGTTCTGTGATATTCTGGGCAGGCTCATTATATATCCATACGAAATATCCATCA
GTCTTACGGTAGGCGTCATCGGAAGTGGTCTATTTATCTACTTGCTGATGAGAAGAAAGGCGAATTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089IDW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.051

99.683

0.559