Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSQ55_RS22705 Genome accession   NZ_CP150148
Coordinates   5178096..5178533 (+) Length   145 a.a.
NCBI ID   WP_339169277.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H7-0943     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5173096..5183533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ55_RS22670 (NSQ55_22670) - 5173180..5173866 (-) 687 WP_280753430.1 M15 family metallopeptidase -
  NSQ55_RS22675 (NSQ55_22675) - 5173984..5174148 (+) 165 WP_169744799.1 hypothetical protein -
  NSQ55_RS22680 (NSQ55_22680) - 5174145..5174480 (-) 336 WP_339169272.1 YolD-like family protein -
  NSQ55_RS22685 (NSQ55_22685) - 5174695..5175255 (-) 561 WP_076128860.1 hypothetical protein -
  NSQ55_RS22690 (NSQ55_22690) - 5175373..5175861 (+) 489 WP_076128858.1 PH domain-containing protein -
  NSQ55_RS22695 (NSQ55_22695) - 5175934..5177409 (-) 1476 WP_339169275.1 glycosyl hydrolase -
  NSQ55_RS22700 (NSQ55_22700) - 5177579..5177995 (-) 417 WP_076103796.1 cytidine deaminase -
  NSQ55_RS22705 (NSQ55_22705) nucA/comI 5178096..5178533 (+) 438 WP_339169277.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSQ55_RS22710 (NSQ55_22710) - 5178615..5178764 (-) 150 WP_155288175.1 hypothetical protein -
  NSQ55_RS22715 (NSQ55_22715) - 5178914..5179090 (+) 177 WP_076098563.1 YjfB family protein -
  NSQ55_RS22720 (NSQ55_22720) - 5179254..5179805 (+) 552 WP_339174581.1 ImmA/IrrE family metallo-endopeptidase -
  NSQ55_RS22725 (NSQ55_22725) - 5179872..5180033 (+) 162 WP_155288176.1 hypothetical protein -
  NSQ55_RS22730 (NSQ55_22730) - 5180399..5180734 (+) 336 WP_076192025.1 DUF3139 domain-containing protein -
  NSQ55_RS22735 (NSQ55_22735) - 5180831..5180968 (+) 138 Protein_4483 phosphomethylpyrimidine synthase ThiC -
  NSQ55_RS22740 (NSQ55_22740) - 5181299..5181793 (+) 495 WP_076220021.1 sigma-70 family RNA polymerase sigma factor -
  NSQ55_RS22745 (NSQ55_22745) - 5181790..5182779 (+) 990 WP_339169280.1 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16168.11 Da        Isoelectric Point: 4.5847

>NTDB_id=963397 NSQ55_RS22705 WP_339169277.1 5178096..5178533(+) (nucA/comI) [Paenibacillus sp. FSL H7-0943]
MKVKKWISSLIIVVLLALASYWFEQNGEPTDPSSPSDSSVVQLTFPSDRYPETAKHIQDAIAKGESATCTINREQAEENR
KESLKGIPTKKGYDRDEWPMAMCKEGGIGADIEYITPSDNRGAGSWVGNQLEDYADGTRVEFMFK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=963397 NSQ55_RS22705 WP_339169277.1 5178096..5178533(+) (nucA/comI) [Paenibacillus sp. FSL H7-0943]
TTGAAAGTAAAAAAATGGATCTCCAGTCTCATCATTGTTGTATTACTTGCTTTGGCTAGTTACTGGTTTGAACAAAACGG
AGAGCCTACAGACCCCTCGTCTCCATCCGATTCGAGTGTTGTTCAGCTAACCTTCCCATCAGACCGCTATCCTGAGACCG
CCAAACATATTCAGGATGCCATTGCGAAAGGTGAATCCGCCACATGTACGATTAACCGAGAGCAGGCTGAAGAGAACCGT
AAAGAGTCCTTAAAAGGGATTCCCACTAAAAAGGGGTATGACCGGGATGAATGGCCAATGGCTATGTGTAAGGAAGGCGG
CATTGGTGCCGACATTGAATACATAACGCCAAGCGATAACCGCGGGGCAGGAAGCTGGGTTGGCAATCAGCTGGAGGATT
ATGCAGACGGAACGCGGGTAGAATTTATGTTTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.903

71.034

0.497