Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NSQ55_RS15285 Genome accession   NZ_CP150148
Coordinates   3504004..3505755 (-) Length   583 a.a.
NCBI ID   WP_076130605.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H7-0943     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3499004..3510755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ55_RS15270 (NSQ55_15270) - 3499553..3500488 (+) 936 WP_081383287.1 carbohydrate ABC transporter permease -
  NSQ55_RS15275 (NSQ55_15275) - 3500579..3502141 (+) 1563 WP_076130604.1 ABC transporter substrate-binding protein -
  NSQ55_RS15280 (NSQ55_15280) rcrQ 3502244..3504004 (-) 1761 WP_036677200.1 ABC transporter ATP-binding protein Regulator
  NSQ55_RS15285 (NSQ55_15285) rcrP 3504004..3505755 (-) 1752 WP_076130605.1 ABC transporter ATP-binding protein Regulator
  NSQ55_RS15290 (NSQ55_15290) - 3505875..3506930 (-) 1056 WP_081386330.1 HAMP domain-containing sensor histidine kinase -
  NSQ55_RS15295 (NSQ55_15295) - 3506927..3507601 (-) 675 WP_076184972.1 response regulator transcription factor -
  NSQ55_RS15300 (NSQ55_15300) - 3507927..3508892 (+) 966 WP_076302104.1 aldo/keto reductase -
  NSQ55_RS15305 (NSQ55_15305) - 3508929..3509780 (+) 852 WP_076130608.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 63914.40 Da        Isoelectric Point: 7.2156

>NTDB_id=963393 NSQ55_RS15285 WP_076130605.1 3504004..3505755(-) (rcrP) [Paenibacillus sp. FSL H7-0943]
MVTILKYLKPKEWALIGISILFIVTQVWLDLELPGYMSEITRLVQIPGSEMSEIIAAGGWMLLCALGSLATSIIVAGIAA
KIAANFSSRLRSKLFDKVQSFSMEEINNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWAMLKITGKSWQWSLA
TGVAIGVLILIVGIVIVLVLPKFQKLQQLTDNLNRVARENLTGLRVIRAYNAESYQEDKFSVANSELTRTNLFANNVLSM
MMPSISLIMSGLSLAIYWIGAILIQNANGTAKMGLFSDMIVFSSYAMQVVMAFMMLIMIFILMPRAHVSAKRINEVLDTK
PSLENGSLTSSKANRLGEVEFKNVSFKYPDAEEYVIEDISFTVKKGETVAFIGSTGCGKSTVVNLIPRFYDATAGEVLVD
GINVNQYEQTALRNKMGYVSQKAILFGGTVSSNVAFGDNGSDLSSDVVDAIYTSQASDFVEKMEGSYEAHVSQGGTNLSG
GQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKKSSGTTILIVAQRIGTIKDADKIIVLEAGRMAGMGTHD
ELMQTCDVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=963393 NSQ55_RS15285 WP_076130605.1 3504004..3505755(-) (rcrP) [Paenibacillus sp. FSL H7-0943]
ATGGTAACTATACTTAAGTACTTAAAACCGAAGGAATGGGCCCTAATCGGTATCAGCATCCTATTCATTGTCACACAGGT
ATGGCTGGATCTGGAATTGCCCGGTTATATGAGCGAGATTACTCGTCTTGTACAGATACCAGGGAGTGAAATGAGCGAAA
TCATTGCAGCCGGAGGCTGGATGTTGCTCTGTGCCCTTGGCAGCTTAGCCACATCAATTATAGTGGCAGGGATCGCCGCT
AAAATTGCCGCCAACTTCTCTTCAAGATTACGCTCCAAATTGTTTGATAAGGTACAGTCTTTCTCTATGGAAGAAATCAA
CAACTTCTCTACAGCTAGTTTAATTACCCGTTCAACAAATGACATTACACAAGTGCAAATGCTGATTGTCATCGGTCTGC
AACTGCTGGTGAAGGCTCCCATCCTTGCCGTTTGGGCAATGCTCAAAATTACAGGCAAGAGTTGGCAGTGGTCGCTTGCT
ACCGGTGTCGCCATTGGGGTATTGATTCTTATTGTCGGCATAGTGATCGTGCTAGTGCTTCCGAAATTCCAAAAATTGCA
GCAACTGACTGATAATCTTAATCGTGTTGCAAGAGAGAATCTTACCGGCCTTCGTGTCATTCGTGCGTATAATGCGGAAA
GCTACCAGGAAGATAAATTTAGTGTAGCCAACAGCGAGCTTACCCGAACGAATTTATTCGCCAATAATGTACTGTCCATG
ATGATGCCAAGTATTTCTCTGATTATGAGCGGTTTAAGTCTCGCAATATATTGGATTGGTGCTATTTTGATTCAAAATGC
CAATGGTACGGCGAAGATGGGATTATTTTCAGATATGATTGTCTTCTCATCCTATGCGATGCAGGTGGTTATGGCATTCA
TGATGCTGATCATGATTTTTATCCTGATGCCTCGTGCCCATGTATCCGCTAAAAGAATCAATGAAGTGCTGGATACTAAG
CCAAGCTTAGAGAACGGATCACTTACTTCCTCCAAGGCAAATCGGTTGGGTGAGGTCGAATTCAAAAATGTCAGCTTTAA
ATATCCGGATGCAGAAGAATACGTTATTGAAGATATCAGCTTTACGGTGAAAAAAGGAGAAACTGTAGCCTTCATCGGTT
CAACCGGATGCGGAAAAAGTACCGTCGTGAACCTGATTCCTCGCTTTTATGATGCTACAGCAGGTGAAGTGTTGGTGGAT
GGAATTAATGTTAACCAATATGAGCAAACTGCACTGCGCAATAAAATGGGATATGTATCTCAGAAAGCGATTTTGTTTGG
CGGCACGGTGAGCTCTAATGTTGCTTTTGGCGATAATGGCAGTGATCTGTCCTCTGATGTTGTTGATGCCATTTACACCT
CTCAAGCTTCAGATTTTGTTGAAAAGATGGAAGGAAGCTACGAGGCTCATGTCTCTCAAGGCGGTACGAACTTGTCTGGC
GGTCAAAAACAACGTCTTTCCATTGCCCGAGCCATTGCCCGTCGTCCTGAAATATTAATCTTCGACGATTCCTTCTCAGC
GCTTGATTATAAGACGGATCGCAAATTGCGAAGTGAATTGAAGAAAAAATCCAGCGGTACAACGATACTAATCGTTGCCC
AACGGATCGGTACAATCAAAGACGCAGACAAAATCATTGTACTGGAAGCCGGACGAATGGCAGGCATGGGAACACATGAT
GAATTGATGCAGACCTGTGATGTCTACCAAGAGATTGCTTACTCACAACTTTCAAAGGAGGAGCTAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-504)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.013

100

0.532