Detailed information NTG0963377

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACJEHG_RS03260
• Genome accession: NZ_CP174228
• Coordinates: 743307..744332 (-)
• Length: 341 a.a.
• NCBI ID: WP_015444568.1
• Uniprot ID: Q9S4T1
• Organism: Legionella pneumophila strain SPF638
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 738307..749332

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJEHG_RS03235 (ACJEHG_03235)	-	739575..739895 (-)	321	WP_010947020.1	hypothetical protein	-
ACJEHG_RS03240 (ACJEHG_03240)	ruvA	739945..740544 (-)	600	WP_010947019.1	Holliday junction branch migration protein RuvA	-
ACJEHG_RS03245 (ACJEHG_03245)	ruvC	740541..741065 (-)	525	WP_010947018.1	crossover junction endodeoxyribonuclease RuvC	-
ACJEHG_RS03250 (ACJEHG_03250)	-	741065..741808 (-)	744	WP_010947017.1	YebC/PmpR family DNA-binding transcriptional regulator	-
ACJEHG_RS03255 (ACJEHG_03255)	hmgA	741954..743204 (+)	1251	WP_010947016.1	homogentisate 1,2-dioxygenase	-
ACJEHG_RS03260 (ACJEHG_03260)	rpoS	743307..744332 (-)	1026	WP_015444568.1	RNA polymerase sigma factor RpoS	Regulator
ACJEHG_RS03265 (ACJEHG_03265)	-	744418..745161 (-)	744	WP_010947014.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACJEHG_RS03270 (ACJEHG_03270)	surE	745180..745935 (-)	756	WP_010947013.1	5'/3'-nucleotidase SurE	-
ACJEHG_RS03275 (ACJEHG_03275)	-	745938..746321 (-)	384	WP_010947012.1	hypothetical protein	-
ACJEHG_RS03280 (ACJEHG_03280)	-	746401..748125 (+)	1725	WP_010947011.1	NAD-dependent malic enzyme	-
ACJEHG_RS03285 (ACJEHG_03285)	-	748173..748544 (-)	372	WP_010947010.1	protease inhibitor I42 family protein	-
ACJEHG_RS03290 (ACJEHG_03290)	-	748581..748898 (-)	318	WP_010947009.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39449.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=963377 ACJEHG_RS03260 WP_015444568.1 743307..744332(-) (rpoS) [Legionella pneumophila strain SPF638]
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=963377 ACJEHG_RS03260 WP_015444568.1 743307..744332(-) (rpoS) [Legionella pneumophila strain SPF638]
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

3D structure

• AlphaFold DB: Q9S4T1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548