Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NSU01_RS25135 Genome accession   NZ_CP150147
Coordinates   5821013..5822770 (+) Length   585 a.a.
NCBI ID   WP_042138979.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H8-0259     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5816013..5827770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU01_RS25115 (NSU01_25115) - 5816827..5817498 (+) 672 WP_076244514.1 response regulator transcription factor -
  NSU01_RS25120 (NSU01_25120) - 5817495..5818565 (+) 1071 WP_197074266.1 HAMP domain-containing sensor histidine kinase -
  NSU01_RS25125 (NSU01_25125) - 5818639..5819703 (-) 1065 WP_076244674.1 suppressor of fused domain protein -
  NSU01_RS25130 (NSU01_25130) - 5819904..5820461 (+) 558 WP_042138977.1 SMI1/KNR4 family protein -
  NSU01_RS25135 (NSU01_25135) rcrP 5821013..5822770 (+) 1758 WP_042138979.1 ABC transporter ATP-binding protein Regulator
  NSU01_RS25140 (NSU01_25140) rcrQ 5822770..5824536 (+) 1767 WP_218639449.1 ABC transporter ATP-binding protein Regulator
  NSU01_RS25145 (NSU01_25145) - 5824627..5826216 (-) 1590 WP_076244512.1 sensor domain-containing diguanylate cyclase -
  NSU01_RS25150 (NSU01_25150) - 5826379..5827341 (-) 963 WP_076244510.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64251.71 Da        Isoelectric Point: 5.8819

>NTDB_id=963359 NSU01_RS25135 WP_042138979.1 5821013..5822770(+) (rcrP) [Paenibacillus sp. FSL H8-0259]
MLKLLKNLEPKEWFLFGISLMFIIAQVWLDLELPGYMSDITRLIQTPGSEMSEIITAGAWMLLCALGSLATSIVVAGIAA
RIAADLSARLRAKLFDKVQSFSMEEISNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWAILKITGKSWQWTLA
TGASVGLLVLIVAVCITLVLPKFKKLQQLTDNLNRVSRENLNGLRVIRAYNAEKYQEEKFASANNELTSTNLFANNVMTT
LMPSISLIMSGLSLSIYWIGAVIIQAADGTAKMGLFSDMIVFSSYAMQVVMAFMMLIMIFILLPRAQVSAKRINEVLETV
PSLKNGSVTHFPVKREDELEFRGVSFKYPDAEDYVLENISFTAKQGETVAFIGSTGCGKSTLVNLIPRFYDATEGEVLVN
GINVKEYDQQVLRNKMGYVSQKAVLFGGTVASNIAFGENGAGQVLSSDIVDAVYTSQSSEFVEKLEGNYEAHIAQGGSNL
SGGQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKDAHASTMLIVAQRIGTIKDADKIIVLEAGQIAGMGT
HDELMQTCAVYQEIAYSQLTKEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=963359 NSU01_RS25135 WP_042138979.1 5821013..5822770(+) (rcrP) [Paenibacillus sp. FSL H8-0259]
ATGTTGAAATTACTGAAGAATCTGGAGCCCAAAGAATGGTTCTTATTCGGCATCAGCCTCATGTTCATTATCGCGCAGGT
CTGGCTGGATCTCGAGCTGCCCGGCTACATGAGTGACATCACCCGGCTGATCCAGACCCCGGGAAGCGAAATGAGTGAGA
TCATTACGGCCGGAGCCTGGATGCTGCTCTGTGCCCTGGGCAGTCTGGCGACCTCGATCGTCGTGGCAGGGATTGCCGCC
AGAATCGCGGCCGACCTGTCAGCCAGATTACGCGCCAAATTGTTCGATAAGGTGCAGTCCTTCTCGATGGAGGAGATCAG
CAACTTCTCGACCGCCAGCCTGATTACCCGCTCCACGAATGATATCACCCAGGTCCAGATGCTGATTGTTATCGGCTTAC
AGCTGCTGGTCAAGGCGCCAATCCTTGCCGTATGGGCTATTCTTAAGATTACGGGTAAAAGCTGGCAGTGGACGCTGGCG
ACAGGCGCCTCTGTTGGGCTGCTGGTGCTGATTGTCGCCGTCTGCATCACTCTCGTTCTTCCTAAATTCAAGAAACTGCA
GCAGTTAACCGACAATCTGAACCGCGTATCCAGAGAGAATCTGAACGGTCTGCGGGTCATCCGGGCTTACAATGCCGAGA
AATACCAGGAAGAGAAATTCGCCTCCGCCAACAACGAGCTAACCAGCACCAATTTGTTTGCCAACAATGTAATGACAACG
CTGATGCCGAGTATTTCCCTGATTATGAGCGGACTCAGCCTCTCCATCTATTGGATTGGTGCTGTAATTATTCAAGCAGC
CGACGGCACCGCCAAGATGGGCTTGTTCTCGGATATGATTGTCTTCTCATCGTACGCGATGCAGGTCGTTATGGCTTTTA
TGATGCTGATCATGATCTTCATTCTGCTGCCCCGCGCCCAGGTATCGGCCAAACGTATTAATGAAGTGCTGGAAACCGTG
CCTAGCCTGAAGAACGGATCAGTCACTCATTTCCCTGTGAAGCGTGAGGATGAGCTTGAATTCAGAGGGGTTAGCTTCAA
ATATCCGGACGCAGAGGATTATGTGCTGGAGAACATCAGCTTTACGGCGAAGCAGGGCGAGACGGTTGCTTTTATCGGCT
CAACAGGCTGCGGCAAGAGTACGCTCGTTAACCTCATTCCCCGTTTCTATGATGCTACCGAAGGCGAAGTGCTCGTGAAC
GGCATCAATGTCAAAGAATACGACCAGCAGGTGCTGCGTAATAAAATGGGCTATGTCTCCCAGAAAGCGGTACTGTTCGG
CGGAACGGTGGCTTCGAATATCGCTTTTGGCGAGAATGGTGCCGGTCAGGTGCTCAGCTCCGATATTGTAGATGCGGTGT
ACACGTCCCAATCCTCTGAATTTGTGGAAAAGCTGGAGGGCAACTATGAGGCCCACATCGCCCAAGGCGGCTCCAATCTG
TCCGGCGGACAGAAGCAGCGGCTGTCGATTGCCAGAGCGATTGCCCGGCGCCCGGAAATTCTGATCTTCGATGATTCGTT
CTCGGCGCTTGACTATAAGACGGACCGCAAGCTGCGCAGCGAGCTGAAGAAAGACGCTCATGCGTCCACGATGCTGATCG
TTGCCCAGCGCATTGGCACGATTAAAGACGCCGACAAAATCATCGTGCTGGAAGCCGGGCAAATTGCCGGTATGGGCACG
CATGACGAATTAATGCAAACCTGCGCCGTCTATCAGGAAATTGCTTACTCACAGCTGACCAAGGAGGAGCTCGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.174

100

0.521