Detailed information NTG0963309

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACJEH7_RS05715
• Genome accession: NZ_CP174227
• Coordinates: 1278409..1279434 (+)
• Length: 341 a.a.
• NCBI ID: WP_015444568.1
• Uniprot ID: Q9S4T1
• Organism: Legionella pneumophila strain SPF639
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1273409..1284434

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJEH7_RS05685 (ACJEH7_05685)	-	1273843..1274160 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
ACJEH7_RS05690 (ACJEH7_05690)	-	1274197..1274568 (+)	372	WP_010947010.1	protease inhibitor I42 family protein	-
ACJEH7_RS05695 (ACJEH7_05695)	-	1274616..1276340 (-)	1725	WP_010947011.1	NAD-dependent malic enzyme	-
ACJEH7_RS05700 (ACJEH7_05700)	-	1276420..1276803 (+)	384	WP_010947012.1	hypothetical protein	-
ACJEH7_RS05705 (ACJEH7_05705)	surE	1276806..1277561 (+)	756	WP_010947013.1	5'/3'-nucleotidase SurE	-
ACJEH7_RS05710 (ACJEH7_05710)	-	1277580..1278323 (+)	744	WP_010947014.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACJEH7_RS05715 (ACJEH7_05715)	rpoS	1278409..1279434 (+)	1026	WP_015444568.1	RNA polymerase sigma factor RpoS	Regulator
ACJEH7_RS05720 (ACJEH7_05720)	hmgA	1279537..1280787 (-)	1251	WP_010947016.1	homogentisate 1,2-dioxygenase	-
ACJEH7_RS05725 (ACJEH7_05725)	-	1280933..1281676 (+)	744	WP_010947017.1	YebC/PmpR family DNA-binding transcriptional regulator	-
ACJEH7_RS05730 (ACJEH7_05730)	ruvC	1281676..1282200 (+)	525	WP_010947018.1	crossover junction endodeoxyribonuclease RuvC	-
ACJEH7_RS05735 (ACJEH7_05735)	ruvA	1282197..1282796 (+)	600	WP_010947019.1	Holliday junction branch migration protein RuvA	-
ACJEH7_RS05740 (ACJEH7_05740)	-	1282846..1283166 (+)	321	WP_010947020.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39449.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=963309 ACJEH7_RS05715 WP_015444568.1 1278409..1279434(+) (rpoS) [Legionella pneumophila strain SPF639]
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=963309 ACJEH7_RS05715 WP_015444568.1 1278409..1279434(+) (rpoS) [Legionella pneumophila strain SPF639]
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

3D structure

• AlphaFold DB: Q9S4T1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548