Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NSQ77_RS03155 Genome accession   NZ_CP150144
Coordinates   672679..674490 (-) Length   603 a.a.
NCBI ID   WP_339228777.1    Uniprot ID   -
Organism   Oceanobacillus sp. FSL K6-2867     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 667679..679490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ77_RS03125 (NSQ77_03125) - 668168..668977 (-) 810 WP_339228771.1 NAD kinase -
  NSQ77_RS03130 (NSQ77_03130) - 669352..669960 (-) 609 WP_339228772.1 GTP pyrophosphokinase family protein -
  NSQ77_RS03135 (NSQ77_03135) - 670183..670755 (+) 573 WP_339228773.1 CYTH domain-containing protein -
  NSQ77_RS03140 (NSQ77_03140) - 670844..671230 (+) 387 WP_339228774.1 globin -
  NSQ77_RS03145 (NSQ77_03145) - 671249..672142 (+) 894 WP_339228775.1 ClpXP adapter SpxH family protein -
  NSQ77_RS03150 (NSQ77_03150) - 672449..672640 (+) 192 WP_339228776.1 hypothetical protein -
  NSQ77_RS03155 (NSQ77_03155) pepF 672679..674490 (-) 1812 WP_339228777.1 oligoendopeptidase F Regulator
  NSQ77_RS03160 (NSQ77_03160) - 674590..675783 (-) 1194 WP_339228778.1 competence protein CoiA family protein -
  NSQ77_RS03165 (NSQ77_03165) - 676145..677446 (-) 1302 WP_339228779.1 DUF5068 domain-containing protein -
  NSQ77_RS03170 (NSQ77_03170) mecA 677592..678284 (-) 693 WP_339228780.1 adaptor protein MecA -
  NSQ77_RS03175 (NSQ77_03175) - 678738..679139 (-) 402 WP_339228781.1 thiol-disulfide oxidoreductase DCC family protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69752.36 Da        Isoelectric Point: 4.7481

>NTDB_id=963244 NSQ77_RS03155 WP_339228777.1 672679..674490(-) (pepF) [Oceanobacillus sp. FSL K6-2867]
MSKTSKELPKRSEIPVESTWKLEDIFATDELWQEELKKLQQEIPKAEAYKGKLSESADALYELLKLQDDLFKRLGKLYTY
SHMRYDQDTTNSFYQGLNAQAEMVLTQASSAMSYVVPEVLQMDENQINQFLEEKEELRLYKKVLDEINRQRPHVLSEKEE
VLLAEASEALSSSSQTFSMLNNADLTFPTIVNEQGEEVDLTHGRYSTFLESKDRRVREDAFNKMYDTYGKFKNTFASTLS
GAVKTHNFSAKVRNYESARQAALDNNNIPEQVYDNLVEAVNEKLPLLHRYTKLRKKVLKLDELHMYDLYTPLVKEVEMKV
TYEDAKDFVFKGLAPLGNEYADILKEAFENRWIDVEENKGKRSGAYSSGSYATNPYILMNWQDDVNNTFTLAHELGHSLH
SYYTRKTQPFRYGDYSIFVAEVASTTNEALLNDYLLNNLADEKQKLYILNHFLEGFRGTVFRQTMFAEFEHEIHVRAKDG
EALTADKLTEIYYDLNKKYYGEAVVSDEAIGLEWTRIPHFYYNYYVYQYATGYSAATALANGILEGKEGAVDRYLDFLKS
GSSDYPIEVLKKAGVDMTSKQPILDALDVFEEKLNEMERMLLE

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=963244 NSQ77_RS03155 WP_339228777.1 672679..674490(-) (pepF) [Oceanobacillus sp. FSL K6-2867]
ATGTCAAAAACATCAAAAGAATTACCTAAACGCAGTGAAATACCGGTTGAATCAACATGGAAATTAGAAGATATTTTCGC
AACAGATGAATTATGGCAGGAAGAATTAAAAAAGCTGCAGCAGGAAATACCAAAGGCAGAAGCATACAAAGGAAAATTAT
CAGAGTCTGCCGATGCGTTATATGAACTTTTAAAACTGCAGGATGACCTCTTTAAACGTCTTGGAAAACTGTATACATAT
TCGCATATGCGATATGATCAGGATACTACGAATTCCTTTTATCAAGGGTTGAATGCTCAAGCGGAGATGGTATTGACCCA
GGCTTCAAGTGCAATGAGCTATGTTGTTCCAGAAGTACTGCAAATGGATGAAAACCAAATTAATCAATTTCTGGAGGAAA
AAGAAGAATTAAGATTATATAAGAAAGTATTGGATGAGATTAATCGTCAGCGTCCACATGTGCTAAGTGAGAAAGAAGAG
GTATTACTCGCTGAAGCTTCCGAAGCATTATCCAGCTCATCACAGACGTTCAGCATGCTCAATAATGCTGATCTAACCTT
TCCAACAATCGTGAACGAACAAGGGGAAGAAGTTGATCTTACACATGGAAGATATTCTACTTTCTTAGAATCGAAGGACC
GTCGTGTGAGAGAAGATGCATTTAATAAGATGTATGATACGTATGGTAAATTCAAAAATACATTTGCATCAACACTCAGT
GGAGCGGTGAAAACCCATAATTTTTCTGCAAAAGTTCGTAATTATGAATCTGCAAGACAGGCGGCTCTTGATAACAATAA
TATTCCAGAGCAAGTATATGATAATTTAGTTGAAGCGGTTAATGAAAAACTACCACTACTGCATCGCTATACAAAACTTC
GGAAAAAGGTCCTAAAGCTTGATGAATTGCATATGTACGATTTGTACACACCATTAGTAAAAGAAGTAGAAATGAAGGTT
ACCTATGAAGATGCAAAGGACTTTGTATTTAAAGGGCTTGCTCCACTTGGAAATGAATATGCGGATATTCTAAAAGAGGC
ATTTGAAAATCGCTGGATTGATGTGGAAGAGAATAAAGGAAAACGAAGTGGTGCATACTCTTCTGGATCCTATGCGACAA
ACCCGTATATTTTAATGAATTGGCAAGATGATGTAAACAATACATTTACATTGGCGCATGAGCTAGGTCATTCTCTTCAT
AGCTACTATACGAGAAAAACGCAGCCTTTCCGCTATGGAGATTATTCCATTTTTGTAGCAGAAGTTGCATCTACGACAAA
TGAAGCATTGTTAAATGATTATTTATTAAATAATCTAGCAGACGAGAAGCAGAAATTATATATTCTAAATCATTTTTTAG
AAGGCTTCCGTGGTACAGTATTCCGTCAGACAATGTTTGCAGAATTTGAACATGAAATCCATGTAAGAGCAAAAGACGGG
GAAGCACTTACGGCAGATAAGCTAACAGAAATATACTATGATTTAAACAAGAAATATTATGGGGAAGCTGTTGTTTCAGA
TGAAGCAATCGGGCTTGAATGGACAAGAATCCCACATTTCTATTACAACTATTATGTGTATCAGTATGCAACAGGATATT
CTGCTGCAACAGCACTTGCAAATGGAATATTAGAAGGAAAAGAAGGAGCTGTTGATCGCTATCTTGACTTCCTGAAATCC
GGAAGCAGTGACTATCCAATTGAAGTGCTGAAAAAGGCTGGCGTCGACATGACATCGAAACAACCGATTTTAGATGCGCT
TGATGTGTTTGAGGAAAAGTTAAATGAAATGGAACGTATGTTATTAGAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(208-587)

Oligopeptidase F (Peptidase_M3_N)

(118-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.931

98.01

0.499