Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NSS59_RS06605 Genome accession   NZ_CP150143
Coordinates   1372522..1374339 (+) Length   605 a.a.
NCBI ID   WP_404996930.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii isolate FSL K6-5071     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1367522..1379339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS59_RS06585 (NSS59_06560) trpS 1367932..1368918 (-) 987 WP_227139786.1 tryptophan--tRNA ligase -
  NSS59_RS06590 (NSS59_06565) spxA 1369646..1370041 (+) 396 WP_034769143.1 transcriptional regulator SpxA -
  NSS59_RS06595 (NSS59_06570) mecA 1370390..1371055 (+) 666 WP_095142208.1 adaptor protein MecA -
  NSS59_RS06600 (NSS59_06575) - 1371224..1372420 (+) 1197 WP_041847712.1 competence protein CoiA -
  NSS59_RS06605 (NSS59_06580) pepF 1372522..1374339 (+) 1818 WP_404996930.1 oligoendopeptidase F Regulator
  NSS59_RS06610 (NSS59_06585) - 1375438..1376460 (-) 1023 WP_404996931.1 ClpXP adapter SpxH family protein -
  NSS59_RS06615 (NSS59_06590) - 1376457..1376867 (-) 411 WP_034769151.1 globin -
  NSS59_RS06620 (NSS59_06595) - 1377118..1377729 (-) 612 WP_404996932.1 lytic transglycosylase domain-containing protein -
  NSS59_RS06625 (NSS59_06600) - 1377752..1378336 (-) 585 WP_404996933.1 CYTH domain-containing protein -
  NSS59_RS06630 (NSS59_06605) - 1378692..1379318 (+) 627 WP_095142212.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69977.93 Da        Isoelectric Point: 4.9096

>NTDB_id=963202 NSS59_RS06605 WP_404996930.1 1372522..1374339(+) (pepF) [Caldifermentibacillus hisashii isolate FSL K6-5071]
MSTEKAVKKLPARNEIPVKDTWALENIFATDEKWKEEFERIKAIIPKAFEFQGKLGENADVLYEALQYQDEVMMRLGKLY
TYAHMRYDQDTTNSFYQGMNDQARNLYTQAASAFSFVVPELLAIDENKIRQFLTEKEELKLYEHALEEINLQRPHVLSPE
VEAILAQSTEVTDAASNTFGMLNNADLEFPSIVDENGEEVEITHGRYIRFLESADRRVRKDAFHALYETYGKFRNTFAST
LSGQVKRNNFYANVRKYKSAREAALSANNIPESVYDNLVETINKNLPLLHRYVALRKKVLGLDELHMYDLYTPLVKDVKM
EVTFEEAKDIVLKGLAPMGEEYLSVLKEGFANRWVDVHENKGKRSGAYSSGAYGTDPYILLNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPFPYGDYSIFVAEVASTCNENLLSEYLLKTLDDDRKRLYILNNYLETFRGTVFRQTMFAEFEHDIHIRSQ
KGEALTAELLTNIYYDLNKKYFGDDVVIDEEIGLEWARIPHFYYNYYVYQYATGLSASTALSKQILEEGEPAVERYIGYL
KSGSSDYPIEVLKKAGVDMTTAEPIENACKVFEEKLTEMERLLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=963202 NSS59_RS06605 WP_404996930.1 1372522..1374339(+) (pepF) [Caldifermentibacillus hisashii isolate FSL K6-5071]
ATGTCTACAGAAAAAGCAGTAAAAAAGCTGCCGGCAAGAAATGAAATCCCGGTAAAGGATACATGGGCACTGGAAAATAT
TTTTGCAACAGACGAAAAATGGAAAGAGGAGTTTGAGCGGATTAAAGCGATAATTCCTAAAGCTTTTGAATTTCAAGGGA
AACTTGGTGAAAATGCTGACGTTTTATATGAAGCATTGCAATATCAAGATGAAGTGATGATGCGACTGGGGAAATTGTAT
ACATATGCCCATATGCGATATGATCAGGATACGACAAATTCTTTCTATCAAGGAATGAATGATCAAGCGAGAAATTTGTA
TACTCAGGCAGCAAGTGCTTTTTCCTTCGTTGTCCCCGAATTACTGGCGATTGATGAGAATAAAATTCGACAGTTTTTAA
CCGAAAAAGAAGAATTAAAGTTATATGAGCATGCTTTGGAAGAAATTAATTTGCAACGTCCGCATGTATTGTCACCTGAA
GTAGAAGCGATTTTAGCCCAAAGTACAGAAGTGACGGATGCGGCGAGTAATACATTCGGCATGCTAAATAACGCAGACTT
GGAGTTTCCATCTATTGTGGATGAAAACGGAGAAGAAGTCGAAATAACGCACGGCCGTTATATTCGCTTTTTAGAAAGTG
CGGATCGCCGTGTGCGAAAAGATGCGTTTCATGCTTTATATGAAACGTATGGGAAATTTCGAAATACGTTTGCGAGTACA
CTAAGCGGACAAGTAAAACGCAATAATTTTTATGCTAATGTCCGTAAATACAAATCGGCACGGGAAGCCGCACTATCCGC
CAACAATATTCCGGAGTCGGTATATGATAATTTAGTGGAAACAATCAATAAAAACTTGCCGCTTCTACACCGTTATGTCG
CATTACGGAAAAAGGTGCTTGGACTTGATGAATTGCATATGTATGATTTGTATACACCGCTTGTTAAAGATGTCAAAATG
GAAGTGACCTTTGAAGAGGCAAAAGATATCGTCTTAAAAGGATTGGCTCCAATGGGGGAAGAATATCTTTCCGTTTTAAA
AGAAGGGTTTGCCAATCGCTGGGTAGATGTCCATGAAAATAAAGGAAAAAGAAGCGGGGCGTACTCATCCGGAGCGTATG
GAACCGATCCGTATATATTGTTAAACTGGCAAGACAATGTCAATAATTTGTTTACCCTTGCCCATGAATTTGGTCATTCG
GTACATAGTTACTATACAAGGAAATACCAACCATTTCCTTATGGCGATTATTCGATTTTTGTTGCCGAAGTTGCCTCCAC
TTGTAATGAAAATTTATTAAGTGAGTATTTGTTAAAAACATTGGACGATGATAGAAAACGGCTGTACATTTTGAATAATT
ATTTGGAAACATTCCGTGGCACGGTATTCCGGCAGACCATGTTTGCTGAATTTGAACATGATATTCACATTCGTTCCCAA
AAAGGGGAAGCATTGACGGCAGAGTTATTGACAAATATTTATTATGATTTGAATAAAAAATATTTTGGTGATGATGTTGT
TATTGACGAGGAAATTGGCTTAGAATGGGCGAGAATTCCGCATTTCTACTACAACTATTATGTTTACCAATATGCAACGG
GCTTAAGTGCATCAACGGCATTGAGTAAACAAATTTTAGAAGAAGGAGAGCCTGCCGTAGAACGATATATCGGTTATTTG
AAATCCGGAAGCTCGGATTATCCAATCGAAGTGTTGAAAAAAGCAGGGGTGGATATGACAACGGCGGAACCAATCGAAAA
TGCCTGCAAAGTTTTTGAAGAGAAATTGACTGAAATGGAACGACTTTTAAATAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.265

98.017

0.502