Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   OW489_RS06190 Genome accession   NZ_AP026446
Coordinates   1311862..1313175 (+) Length   437 a.a.
NCBI ID   WP_162979398.1    Uniprot ID   -
Organism   Helicobacter pylori strain CHC155     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1306862..1318175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OW489_RS06170 (CHC155_12120) crdR 1307182..1307823 (+) 642 WP_120856541.1 copper response regulator transcription factor CrdR -
  OW489_RS06175 (CHC155_12130) crdS 1307789..1308991 (+) 1203 WP_267286212.1 copper-sensing histidine kinase CrdS -
  OW489_RS06180 (CHC155_12140) - 1308994..1310388 (+) 1395 WP_267285932.1 NAD(P)H-hydrate dehydratase -
  OW489_RS06185 (CHC155_12150) - 1310399..1311865 (+) 1467 WP_120856544.1 replicative DNA helicase -
  OW489_RS06190 (CHC155_12160) comEC/comE3 1311862..1313175 (+) 1314 WP_162979398.1 ComEC/Rec2 family competence protein Machinery gene
  OW489_RS06195 (CHC155_12170) mqnP 1313246..1314088 (+) 843 WP_231212726.1 menaquinone biosynthesis prenyltransferase MqnP -
  OW489_RS06200 (CHC155_12180) - 1314081..1314575 (+) 495 WP_162979399.1 hypothetical protein -
  OW489_RS06205 (CHC155_12190) - 1314588..1315091 (+) 504 WP_120856547.1 DUF6115 domain-containing protein -
  OW489_RS06210 (CHC155_12200) - 1315088..1315891 (+) 804 WP_120856548.1 phosphatidylserine decarboxylase -
  OW489_RS06215 (CHC155_12210) nadA 1315881..1316891 (+) 1011 WP_120856549.1 quinolinate synthase NadA -
  OW489_RS06220 (CHC155_12220) nadC 1316891..1317712 (+) 822 WP_120856550.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50167.10 Da        Isoelectric Point: 9.9068

>NTDB_id=96320 OW489_RS06190 WP_162979398.1 1311862..1313175(+) (comEC/comE3) [Helicobacter pylori strain CHC155]
MKDKTFQGAFEVLTTPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKIKDQKTYFVLKLQSKGII
FYTTIKEPLKNLQYRHAQFFGKLKSCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALAGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQTFFKTSSFLMRSFQVISLS
TLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVSSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=96320 OW489_RS06190 WP_162979398.1 1311862..1313175(+) (comEC/comE3) [Helicobacter pylori strain CHC155]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAAGTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGTTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAATTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTTCAATCAAAGGGCATAATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAGTACCGCCACGCACAATTTTTTGGCAAACTCAAATCTTGCTC
GTTTTTGGAGTCTTTAAAGTCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGCCCATTCAAGCGCTTTAGCGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGACATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAACCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
ACGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947

Multiple sequence alignment