Detailed information NTG0963151

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACJEHS_RS00825
• Genome accession: NZ_CP174225
• Coordinates: 183275..184300 (+)
• Length: 341 a.a.
• NCBI ID: WP_015444568.1
• Uniprot ID: Q9S4T1
• Organism: Legionella pneumophila strain SPF641
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 178275..189300

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJEHS_RS00795 (ACJEHS_00795)	-	178709..179026 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
ACJEHS_RS00800 (ACJEHS_00800)	-	179063..179434 (+)	372	WP_010947010.1	protease inhibitor I42 family protein	-
ACJEHS_RS00805 (ACJEHS_00805)	-	179482..181206 (-)	1725	WP_010947011.1	NAD-dependent malic enzyme	-
ACJEHS_RS00810 (ACJEHS_00810)	-	181286..181669 (+)	384	WP_010947012.1	hypothetical protein	-
ACJEHS_RS00815 (ACJEHS_00815)	surE	181672..182427 (+)	756	WP_010947013.1	5'/3'-nucleotidase SurE	-
ACJEHS_RS00820 (ACJEHS_00820)	-	182446..183189 (+)	744	WP_010947014.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACJEHS_RS00825 (ACJEHS_00825)	rpoS	183275..184300 (+)	1026	WP_015444568.1	RNA polymerase sigma factor RpoS	Regulator
ACJEHS_RS00830 (ACJEHS_00830)	hmgA	184403..185653 (-)	1251	WP_010947016.1	homogentisate 1,2-dioxygenase	-
ACJEHS_RS00835 (ACJEHS_00835)	-	185799..186542 (+)	744	WP_010947017.1	YebC/PmpR family DNA-binding transcriptional regulator	-
ACJEHS_RS00840 (ACJEHS_00840)	ruvC	186542..187066 (+)	525	WP_010947018.1	crossover junction endodeoxyribonuclease RuvC	-
ACJEHS_RS00845 (ACJEHS_00845)	ruvA	187063..187662 (+)	600	WP_010947019.1	Holliday junction branch migration protein RuvA	-
ACJEHS_RS00850 (ACJEHS_00850)	-	187712..188032 (+)	321	WP_010947020.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39449.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=963151 ACJEHS_RS00825 WP_015444568.1 183275..184300(+) (rpoS) [Legionella pneumophila strain SPF641]
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=963151 ACJEHS_RS00825 WP_015444568.1 183275..184300(+) (rpoS) [Legionella pneumophila strain SPF641]
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

3D structure

• AlphaFold DB: Q9S4T1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548