Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   NSS86_RS00685 Genome accession   NZ_CP150142
Coordinates   128249..128923 (+) Length   224 a.a.
NCBI ID   WP_000866106.1    Uniprot ID   -
Organism   Staphylococcus sp. FSL W8-0056     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 120809..135671 128249..128923 within 0


Gene organization within MGE regions


Location: 120809..135671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS86_RS00650 (NSS86_00650) - 120809..121483 (-) 675 WP_001105987.1 IS6-like element IS257 family transposase -
  NSS86_RS00655 (NSS86_00655) - 121549..122145 (+) 597 WP_000275959.1 gamma-glutamyltransferase -
  NSS86_RS00660 (NSS86_00660) - 122405..123250 (+) 846 WP_001818589.1 YitT family protein -
  NSS86_RS00665 (NSS86_00665) - 123400..124011 (-) 612 WP_000635275.1 recombinase family protein -
  NSS86_RS00670 (NSS86_00670) - 124497..125396 (-) 900 WP_000196697.1 Mph(C) family macrolide 2'-phosphotransferase -
  NSS86_RS00675 (NSS86_00675) msr(A) 125495..126961 (-) 1467 WP_000438874.1 ABC-F type ribosomal protection protein Msr(A) -
  NSS86_RS00680 (NSS86_00680) - 127435..128109 (+) 675 WP_001105960.1 IS6 family transposase -
  NSS86_RS00685 (NSS86_00685) braR 128249..128923 (+) 675 WP_000866106.1 response regulator transcription factor Regulator
  NSS86_RS00690 (NSS86_00690) - 128920..129801 (+) 882 Protein_137 sensor histidine kinase -
  NSS86_RS00695 (NSS86_00695) - 129917..130846 (+) 930 WP_000793446.1 ABC transporter ATP-binding protein -
  NSS86_RS00700 (NSS86_00700) - 130839..131576 (+) 738 WP_000369394.1 ABC transporter permease -
  NSS86_RS00705 (NSS86_00705) - 131590..131766 (+) 177 Protein_140 undecaprenyl-diphosphate phosphatase -
  NSS86_RS00710 (NSS86_00710) - 131823..132497 (+) 675 WP_001105960.1 IS6 family transposase -
  NSS86_RS00715 (NSS86_00715) - 132638..133273 (+) 636 Protein_142 aminoglycoside 6-adenylyltransferase -
  NSS86_RS00720 (NSS86_00720) sat4 133270..133805 (+) 536 Protein_143 streptothricin N-acetyltransferase Sat4 -
  NSS86_RS00725 (NSS86_00725) aph(3')-IIIa 133898..134692 (+) 795 WP_001096887.1 aminoglycoside O-phosphotransferase APH(3')-IIIa -
  NSS86_RS00730 (NSS86_00730) - 134997..135671 (-) 675 WP_001105987.1 IS6-like element IS257 family transposase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25839.93 Da        Isoelectric Point: 4.9884

>NTDB_id=963146 NSS86_RS00685 WP_000866106.1 128249..128923(+) (braR) [Staphylococcus sp. FSL W8-0056]
MKVLIVEDDLVIGKMLAEELKKWQLEPILIEGFNHVMDAFNTNAPELVLLDINLPAFNGYHWCQEIRKVSTVPIIFISSR
NDSMDQVMAMQMGADDFIEKPFNMTVTITKIQALLRRTYDFTTQVNNLTVDDCELLLDAAKLKFNEETIDLTHTELQIMH
SLFQNKGKFVSRNALIEKCWESEHFIDDNTLAVNITRLRKKLQKLGLTDFIETKKNVGYRVGDV

Nucleotide


Download         Length: 675 bp        

>NTDB_id=963146 NSS86_RS00685 WP_000866106.1 128249..128923(+) (braR) [Staphylococcus sp. FSL W8-0056]
ATGAAAGTATTAATCGTAGAGGATGACTTAGTTATCGGGAAGATGCTTGCTGAAGAGCTCAAGAAGTGGCAGCTAGAACC
GATCTTAATAGAAGGTTTCAATCATGTAATGGATGCCTTCAACACGAATGCACCGGAACTTGTGTTACTCGATATTAATT
TACCTGCCTTCAATGGTTATCACTGGTGTCAGGAGATTCGTAAAGTTTCTACTGTACCGATTATATTTATTAGTTCGCGT
AACGACAGTATGGATCAAGTAATGGCGATGCAGATGGGTGCGGATGATTTCATTGAGAAGCCATTTAATATGACTGTTAC
AATTACTAAGATTCAAGCACTATTACGCCGCACGTATGATTTCACCACTCAAGTTAATAATTTAACAGTAGATGATTGCG
AGTTACTACTTGATGCAGCAAAGCTTAAATTTAATGAAGAAACCATAGACCTGACACACACTGAATTGCAAATCATGCAT
AGCTTATTCCAGAACAAGGGCAAATTCGTCAGTCGTAATGCGTTAATCGAAAAATGCTGGGAATCAGAACACTTCATTGA
TGACAATACGCTTGCTGTCAACATTACACGTTTACGCAAAAAGCTACAAAAACTAGGACTTACAGATTTTATCGAAACGA
AGAAAAATGTCGGATATCGTGTAGGTGACGTATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)

Response regulator receiver domain (Response_reg)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

66.516

98.661

0.656