Detailed information NTG0963103

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACJEHR_RS06230
• Genome accession: NZ_CP174224
• Coordinates: 1379930..1380955 (+)
• Length: 341 a.a.
• NCBI ID: WP_015444568.1
• Uniprot ID: Q9S4T1
• Organism: Legionella pneumophila strain SPF642
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1374930..1385955

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJEHR_RS06200 (ACJEHR_06200)	-	1375364..1375681 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
ACJEHR_RS06205 (ACJEHR_06205)	-	1375718..1376089 (+)	372	WP_010947010.1	protease inhibitor I42 family protein	-
ACJEHR_RS06210 (ACJEHR_06210)	-	1376137..1377861 (-)	1725	WP_010947011.1	NAD-dependent malic enzyme	-
ACJEHR_RS06215 (ACJEHR_06215)	-	1377941..1378324 (+)	384	WP_010947012.1	hypothetical protein	-
ACJEHR_RS06220 (ACJEHR_06220)	surE	1378327..1379082 (+)	756	WP_010947013.1	5'/3'-nucleotidase SurE	-
ACJEHR_RS06225 (ACJEHR_06225)	-	1379101..1379844 (+)	744	WP_010947014.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACJEHR_RS06230 (ACJEHR_06230)	rpoS	1379930..1380955 (+)	1026	WP_015444568.1	RNA polymerase sigma factor RpoS	Regulator
ACJEHR_RS06235 (ACJEHR_06235)	hmgA	1381058..1382308 (-)	1251	WP_010947016.1	homogentisate 1,2-dioxygenase	-
ACJEHR_RS06240 (ACJEHR_06240)	-	1382454..1383197 (+)	744	WP_010947017.1	YebC/PmpR family DNA-binding transcriptional regulator	-
ACJEHR_RS06245 (ACJEHR_06245)	ruvC	1383197..1383721 (+)	525	WP_010947018.1	crossover junction endodeoxyribonuclease RuvC	-
ACJEHR_RS06250 (ACJEHR_06250)	ruvA	1383718..1384317 (+)	600	WP_010947019.1	Holliday junction branch migration protein RuvA	-
ACJEHR_RS06255 (ACJEHR_06255)	-	1384367..1384687 (+)	321	WP_010947020.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39449.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=963103 ACJEHR_RS06230 WP_015444568.1 1379930..1380955(+) (rpoS) [Legionella pneumophila strain SPF642]
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=963103 ACJEHR_RS06230 WP_015444568.1 1379930..1380955(+) (rpoS) [Legionella pneumophila strain SPF642]
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

3D structure

• AlphaFold DB: Q9S4T1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548