Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   WMC18_RS18930 Genome accession   NZ_CP150130
Coordinates   3730314..3731459 (+) Length   381 a.a.
NCBI ID   WP_107994197.1    Uniprot ID   -
Organism   Bacillus velezensis strain SEC-482     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3725314..3736459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMC18_RS18910 (WMC18_18870) - 3725788..3726504 (-) 717 WP_014306017.1 Crp/Fnr family transcriptional regulator -
  WMC18_RS18915 (WMC18_18875) narK 3726602..3727792 (-) 1191 WP_095315495.1 nitrate transporter NarK -
  WMC18_RS18920 (WMC18_18880) argS 3727927..3729597 (-) 1671 WP_003151071.1 arginine--tRNA ligase -
  WMC18_RS18925 (WMC18_18885) - 3729594..3730022 (-) 429 WP_003151069.1 DUF1934 domain-containing protein -
  WMC18_RS18930 (WMC18_18890) rapF 3730314..3731459 (+) 1146 WP_107994197.1 tetratricopeptide repeat protein Regulator
  WMC18_RS18935 (WMC18_18895) - 3731443..3731562 (+) 120 WP_003151066.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  WMC18_RS18940 (WMC18_18900) - 3731760..3731963 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  WMC18_RS18945 (WMC18_18905) - 3731977..3732180 (+) 204 WP_069473623.1 hypothetical protein -
  WMC18_RS18950 (WMC18_18915) - 3732588..3732869 (+) 282 WP_003151060.1 hypothetical protein -
  WMC18_RS18955 (WMC18_18920) - 3732913..3733425 (+) 513 WP_003151059.1 stage II sporulation protein M -
  WMC18_RS18960 (WMC18_18925) - 3734016..3734234 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  WMC18_RS18965 (WMC18_18930) speB 3734404..3735276 (-) 873 WP_003151054.1 agmatinase -
  WMC18_RS18970 (WMC18_18935) speE 3735336..3736166 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45313.45 Da        Isoelectric Point: 4.9969

>NTDB_id=963085 WMC18_RS18930 WP_107994197.1 3730314..3731459(+) (rapF) [Bacillus velezensis strain SEC-482]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELDQREYLSAIKFFKKAETKLSFIKDTIDKAEYFFKMSEVYYYLKQTYVS
TDYARQAYEIYKAQSSYDIRLIQCQSLFGANFLDLKLYDRAITHFQKAFSLAETEKQPQLMGRTLYNIALCKQSLNDYEA
AITYVEKAIDVFESAKMTPSLPQAYFLMTQIHYKLERYDKALEYHKKGVIHSEESADSVYLHEFEFLKSLYVNGPDEDAM
KRSFDFLESKMMYADIEDFALDAAKYYHKLEDYKKASTYFLKVEEARQHIQGGVTFYEAEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=963085 WMC18_RS18930 WP_107994197.1 3730314..3731459(+) (rapF) [Bacillus velezensis strain SEC-482]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGATCAGCGGGAATATTTGTCGGCTATAAAATTTTTTAAAAAGGCTGAGACGAAACTCTCATTTA
TTAAGGATACTATTGATAAAGCCGAGTACTTTTTCAAGATGTCTGAAGTCTACTACTATTTGAAACAAACGTATGTATCT
ACCGATTACGCAAGGCAGGCATATGAAATATATAAAGCTCAGTCGTCATACGATATCAGGCTCATACAATGCCAATCCTT
ATTCGGAGCAAATTTCCTGGATTTAAAACTATATGATCGGGCAATTACTCACTTTCAAAAGGCTTTTTCTTTGGCAGAAA
CAGAAAAACAGCCTCAATTAATGGGCAGGACGCTGTATAACATCGCACTTTGCAAACAAAGCCTGAACGACTATGAAGCA
GCTATAACTTATGTTGAAAAAGCCATTGATGTTTTTGAAAGTGCTAAAATGACCCCTTCTTTGCCCCAAGCATATTTTTT
AATGACACAGATTCATTATAAATTAGAAAGATACGACAAAGCGCTCGAGTATCATAAAAAAGGAGTTATCCATTCCGAAG
AGTCAGCAGATTCAGTTTATTTACACGAATTCGAATTTTTAAAATCTTTGTATGTGAACGGACCTGATGAGGATGCAATG
AAACGGAGTTTTGACTTTTTGGAAAGTAAGATGATGTATGCAGATATAGAAGATTTTGCTCTTGATGCAGCTAAATATTA
TCACAAACTTGAAGATTATAAAAAAGCTTCAACATACTTTTTAAAAGTTGAAGAAGCAAGACAGCATATTCAAGGGGGGG
TAACTTTTTATGAAGCTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(223-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

74.541

100

0.745
  rapC Bacillus subtilis subsp. subtilis str. 168

52.895

99.738

0.528