Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   WMC18_RS12545 Genome accession   NZ_CP150130
Coordinates   2534747..2535547 (-) Length   266 a.a.
NCBI ID   WP_107994314.1    Uniprot ID   -
Organism   Bacillus velezensis strain SEC-482     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2529747..2540547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMC18_RS12515 (WMC18_12510) - 2530294..2530926 (+) 633 WP_003153189.1 helix-turn-helix domain-containing protein -
  WMC18_RS12520 (WMC18_12515) - 2531217..2531354 (+) 138 WP_162918042.1 hypothetical protein -
  WMC18_RS12525 (WMC18_12520) - 2531448..2532566 (+) 1119 WP_088037465.1 NADH-dependent flavin oxidoreductase -
  WMC18_RS12530 (WMC18_12525) - 2532692..2532904 (+) 213 WP_024085590.1 spore germination protein -
  WMC18_RS12535 (WMC18_12530) - 2533030..2533242 (+) 213 WP_014305392.1 spore germination protein -
  WMC18_RS12540 (WMC18_12535) alr 2533418..2534599 (+) 1182 WP_025852858.1 alanine racemase -
  WMC18_RS12545 (WMC18_12540) spo0A 2534747..2535547 (-) 801 WP_107994314.1 sporulation transcription factor Spo0A Regulator
  WMC18_RS12550 (WMC18_12545) spoIVB 2535828..2537108 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  WMC18_RS12555 (WMC18_12550) recN 2537272..2539002 (-) 1731 WP_025852862.1 DNA repair protein RecN Machinery gene
  WMC18_RS12560 (WMC18_12555) ahrC 2539034..2539483 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  WMC18_RS12565 (WMC18_12560) - 2539580..2540425 (-) 846 WP_003153172.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29629.17 Da        Isoelectric Point: 6.6113

>NTDB_id=963051 WMC18_RS12545 WP_107994314.1 2534747..2535547(-) (spo0A) [Bacillus velezensis strain SEC-482]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=963051 WMC18_RS12545 WP_107994314.1 2534747..2535547(-) (spo0A) [Bacillus velezensis strain SEC-482]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TGTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGTGAATCAGAGCTCAAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCATCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCCC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAACTCAGAGTTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

97.004

100

0.974