Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WMC18_RS07240 Genome accession   NZ_CP150130
Coordinates   1374215..1374499 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain SEC-482     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1369215..1379499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMC18_RS07220 (WMC18_07215) - 1370462..1371370 (+) 909 WP_025851471.1 ketopantoate reductase family protein -
  WMC18_RS07225 (WMC18_07220) - 1371400..1372632 (-) 1233 WP_025851469.1 aminopeptidase -
  WMC18_RS07230 (WMC18_07225) - 1372733..1372867 (-) 135 WP_003154559.1 protein YkpC -
  WMC18_RS07235 (WMC18_07230) mreBH 1372939..1373946 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  WMC18_RS07240 (WMC18_07235) abrB 1374215..1374499 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  WMC18_RS07245 (WMC18_07240) - 1374672..1375976 (+) 1305 WP_014304932.1 ATP-binding protein -
  WMC18_RS07250 (WMC18_07245) - 1375978..1376805 (+) 828 WP_025851463.1 gamma-glutamylcyclotransferase -
  WMC18_RS07255 (WMC18_07250) ktrC 1376846..1377511 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  WMC18_RS07260 (WMC18_07255) ade 1377660..1379393 (+) 1734 WP_025851460.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=963044 WMC18_RS07240 WP_024085249.1 1374215..1374499(+) (abrB) [Bacillus velezensis strain SEC-482]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=963044 WMC18_RS07240 WP_024085249.1 1374215..1374499(+) (abrB) [Bacillus velezensis strain SEC-482]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGTAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543