Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   WMC18_RS07030 Genome accession   NZ_CP150130
Coordinates   1337858..1338322 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain SEC-482     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1332858..1343322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMC18_RS07010 (WMC18_07005) - 1333338..1335158 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  WMC18_RS07015 (WMC18_07010) - 1335134..1336353 (-) 1220 Protein_1322 aminotransferase A -
  WMC18_RS07020 (WMC18_07015) - 1336554..1336715 (-) 162 WP_007409608.1 hypothetical protein -
  WMC18_RS07025 (WMC18_07020) cheV 1336904..1337815 (+) 912 WP_014304917.1 chemotaxis protein CheV -
  WMC18_RS07030 (WMC18_07025) kre 1337858..1338322 (-) 465 WP_003154622.1 YkyB family protein Regulator
  WMC18_RS07035 (WMC18_07030) - 1338445..1339737 (-) 1293 WP_107994416.1 MFS transporter -
  WMC18_RS07040 (WMC18_07035) - 1339813..1340307 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  WMC18_RS07045 (WMC18_07040) - 1340382..1341245 (-) 864 WP_003154619.1 metallophosphoesterase -
  WMC18_RS07050 (WMC18_07045) fadH 1341389..1342153 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  WMC18_RS07055 (WMC18_07050) - 1342264..1342809 (+) 546 Protein_1330 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=963042 WMC18_RS07030 WP_003154622.1 1337858..1338322(-) (kre) [Bacillus velezensis strain SEC-482]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=963042 WMC18_RS07030 WP_003154622.1 1337858..1338322(-) (kre) [Bacillus velezensis strain SEC-482]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGCTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929