Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   WMO34_RS14945 Genome accession   NZ_CP150121
Coordinates   3238416..3239546 (-) Length   376 a.a.
NCBI ID   WP_014502536.1    Uniprot ID   G7TJ40
Organism   Xanthomonas oryzae pv. oryzicola strain Selingue 50     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3233416..3244546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMO34_RS14910 (WMO34_14860) ruvX 3233504..3233971 (-) 468 WP_014502544.1 Holliday junction resolvase RuvX -
  WMO34_RS14915 (WMO34_14865) - 3233964..3234530 (-) 567 WP_024711782.1 YqgE/AlgH family protein -
  WMO34_RS14920 (WMO34_14870) - 3234606..3235804 (+) 1199 Protein_2842 hypothetical protein -
  WMO34_RS14925 (WMO34_14875) - 3235801..3236373 (+) 573 WP_014502539.1 DNA-3-methyladenine glycosylase I -
  WMO34_RS14930 (WMO34_14880) - 3236410..3237243 (+) 834 WP_033005150.1 DUF72 domain-containing protein -
  WMO34_RS14940 (WMO34_14890) - 3237470..3238144 (-) 675 WP_024711780.1 YitT family protein -
  WMO34_RS14945 (WMO34_14895) pilU 3238416..3239546 (-) 1131 WP_014502536.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  WMO34_RS14950 (WMO34_14900) pilT 3239660..3240697 (-) 1038 WP_014502535.1 type IV pilus twitching motility protein PilT Machinery gene
  WMO34_RS14955 (WMO34_14905) - 3241063..3241755 (+) 693 WP_044750693.1 YggS family pyridoxal phosphate-dependent enzyme -
  WMO34_RS14960 (WMO34_14910) proC 3241799..3242659 (+) 861 WP_014502533.1 pyrroline-5-carboxylate reductase -
  WMO34_RS14965 (WMO34_14915) - 3242743..3244062 (-) 1320 WP_144406543.1 IS701-like element ISXo15 family transposase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41940.17 Da        Isoelectric Point: 6.8287

>NTDB_id=962930 WMO34_RS14945 WP_014502536.1 3238416..3239546(-) (pilU) [Xanthomonas oryzae pv. oryzicola strain Selingue 50]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVNGKISPITQTPLTAQQSRDLVLNVMTPSQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVDELSLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGHRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWESALKNTLRQAPDVIMIGEVRAREGMDHAIAFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRNQLLMDLSLNLKGVVAQQLIPTPDGRSRRVAMEIMLGTPLVQDYIRDGEIHKLKEIMKESTNLGMRTF
DQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDAKTLSQGMDGVEISEVR

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=962930 WMO34_RS14945 WP_014502536.1 3238416..3239546(-) (pilU) [Xanthomonas oryzae pv. oryzicola strain Selingue 50]
ATGAGCACCATCGACTTCACCTCCTTCCTCAAGCTGATGGCGCATCAGAAGGCGTCGGACCTGTTCATCACCTCAGGGAT
GCCACCGGCGATCAAGGTGAATGGCAAGATCAGCCCGATTACCCAGACGCCGCTGACTGCGCAGCAGAGCCGCGATCTGG
TGTTGAACGTGATGACGCCCTCGCAGCGCGAGGAATTCGAAAAGACCCACGAGTGCAACTTCGCCATCGGCGTTTCAGGG
GTGGGGCGTTTTCGTGTGAGCTGTTTCTACCAGCGTAATCAGGTCGGTATGGTGCTGCGCCGGATCGAAACGCGCATCCC
CACCGTGGACGAGTTGAGCCTGCCTCCGGTGATCAAGACGCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
CCACCGGTACCGGTAAGTCGACCTCGCTGGCGGCGATGATCGGCCACCGCAACCAGAATTCCACCGGCCACATCATCACC
ATCGAAGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGATACCGACAG
CTGGGAAAGCGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGTGCCCGCGAGGGCA
TGGACCACGCGATCGCCTTCGCCGAAACCGGCCACCTGGTGCTGTGCACGCTGCACGCCAACAACGCCAATCAGGCGATG
GACCGCATCATCAACTTCTTCCCCGAAGACCGCCGCAATCAGCTGCTGATGGACCTGTCGCTCAATCTCAAGGGCGTGGT
GGCGCAGCAGCTGATTCCGACGCCGGATGGCCGCAGCCGCCGCGTTGCGATGGAAATCATGTTGGGTACGCCGCTGGTGC
AGGACTACATCCGCGACGGCGAAATCCACAAGCTCAAGGAGATCATGAAGGAGTCCACCAACCTGGGCATGCGCACCTTC
GACCAGAGCCTGTTCGAGCTCTACCAGGCTGGCGAAATCAGCTACGAAGATGCATTGCGCTACGCCGACTCGCAGAACGA
AGTGCGCTTGCGCATCAAGCTCTCGCAGGGGGGCGATGCCAAGACCTTGTCGCAGGGCATGGATGGTGTGGAGATTTCCG
AAGTTCGATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(108-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7TJ40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

66.485

97.606

0.649
  pilU Acinetobacter baylyi ADP1

64.986

94.947

0.617
  pilU Vibrio cholerae strain A1552

52.809

94.681

0.5
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.017

94.947

0.399
  pilT Acinetobacter nosocomialis M2

39.535

91.489

0.362
  pilT Acinetobacter baumannii D1279779

39.535

91.489

0.362
  pilT Acinetobacter baumannii strain A118

39.535

91.489

0.362