Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   WHK83_RS17180 Genome accession   NZ_CP150097
Coordinates   3648038..3649192 (+) Length   384 a.a.
NCBI ID   WP_000755282.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HAU425     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3643038..3654192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS17155 - 3643190..3644404 (+) 1215 WP_031988364.1 oxygenase MpaB family protein -
  WHK83_RS17160 - 3644474..3644680 (-) 207 WP_000182542.1 hypothetical protein -
  WHK83_RS17165 - 3644734..3646848 (-) 2115 WP_406859556.1 TonB-dependent copper receptor -
  WHK83_RS17170 - 3646920..3647348 (-) 429 WP_000231981.1 DUF2946 family protein -
  WHK83_RS17175 def 3647385..3647915 (-) 531 WP_001196539.1 peptide deformylase -
  WHK83_RS17180 tsaP 3648038..3649192 (+) 1155 WP_000755282.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  WHK83_RS17185 dprA 3649213..3650343 (+) 1131 WP_002019199.1 DNA-processing protein DprA Machinery gene
  WHK83_RS17190 - 3650394..3650963 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  WHK83_RS17195 - 3651355..3652275 (-) 921 WP_086227613.1 DMT family transporter -
  WHK83_RS17200 - 3652381..3653031 (-) 651 WP_086227614.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42336.25 Da        Isoelectric Point: 8.5816

>NTDB_id=962860 WHK83_RS17180 WP_000755282.1 3648038..3649192(+) (tsaP) [Acinetobacter baumannii strain HAU425]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGVQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=962860 WHK83_RS17180 WP_000755282.1 3648038..3649192(+) (tsaP) [Acinetobacter baumannii strain HAU425]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTAGGTATTATTCGCCGCTACACTGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGCGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAACAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAAGGCGTTCAAGTAGGCCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.219

100

0.992