Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   WHK83_RS16230 Genome accession   NZ_CP150097
Coordinates   3443678..3445906 (+) Length   742 a.a.
NCBI ID   WP_272316668.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HAU425     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3438678..3450906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS16205 lnt 3439064..3440623 (+) 1560 WP_001203090.1 apolipoprotein N-acyltransferase -
  WHK83_RS16210 - 3440625..3440963 (-) 339 WP_269527479.1 tRNA-binding protein -
  WHK83_RS16215 - 3441107..3441451 (-) 345 WP_000643174.1 hypothetical protein -
  WHK83_RS16220 gspG 3441719..3442300 (-) 582 WP_000865312.1 type II secretion system major pseudopilin GspG -
  WHK83_RS16225 gspF 3442324..3443529 (-) 1206 WP_001112089.1 type II secretion system inner membrane protein GspF -
  WHK83_RS16230 priA 3443678..3445906 (+) 2229 WP_272316668.1 primosomal protein N' Machinery gene
  WHK83_RS16235 - 3445983..3447824 (+) 1842 WP_272316669.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  WHK83_RS16240 - 3447990..3448865 (+) 876 WP_001281765.1 Hsp33 family molecular chaperone HslO -
  WHK83_RS16245 - 3449003..3449614 (+) 612 WP_138148752.1 LysE family translocator -
  WHK83_RS16250 - 3449765..3450721 (+) 957 WP_001107916.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83902.69 Da        Isoelectric Point: 8.4600

>NTDB_id=962851 WHK83_RS16230 WP_272316668.1 3443678..3445906(+) (priA) [Acinetobacter baumannii strain HAU425]
MTITPKPDSVVYRVHVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGNFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNAEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTLNEDQKKATQHVLNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGYLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDQCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=962851 WHK83_RS16230 WP_272316668.1 3443678..3445906(+) (priA) [Acinetobacter baumannii strain HAU425]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCATGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTAACTTTCAGCTTAAGGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTTCCGATTGGTGA
GGTGATGCAGACTGCTTTACCTGCGTTATTGCGTCAGGGCAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGACAATGCCGAAGCTTTATTAAAACGCTCAATCAAACAGCAAGATGCTTATCAAATTTTAAAATTACATCCTGCC
GGAACCACTGAAAATATTCTCAATTTAAGTGGTGTAGAAACTGCAACACTTAAAGCACTACAAAAGAAAGGTCTCGTAGA
CTGTACGCTTGAGCCTCATGACTTTAGTCCATCCCCTGTGCAATTGGCGCAAATGCCACTCACGCTCAATGAAGACCAAA
AGAAGGCCACCCAGCACGTCCTTAATGCACAGCATCAATACCAAGCATTTTTACTAGATGGCTTAACTGGAAGTGGTAAA
ACCGAAGTTTATTTGCACATCATGCATGAGGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTGCCTGAAATTGGTTT
AACCCCTCAAACTATTTCGCGCTTTAAGTCTCGTTTTAACTGCGACATTGCTTTATTACATTCGGGGTTAAATGACTCTA
AACGCCTACAAGCATGGCAACAAGCACAGACTGGAAAGGCCTCTATTATTTTAGGAACACGTTCAGCCATTTATACCCCG
CTGCCACGTTTGGGCCTGATCATTTTAGATGAAGAACACGACCTGTCTTATAAACAACAAGAAGGTTTCCGTTACCATGC
TCGTGATGTCGCACTTTACCGAGGATATTTACAAGGCTGTCCTGTTCTTTTAGGTTCAGCAACTCCAAGCATTGACAGTT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCACTTCAGCTGAACCAGCGTGCAGGCCATGCGCTTTTACCAAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGTATTAGTCAGCCTTTAATCGAACAGATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATTTTTTTAAACCGTCGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCGCATTGTGATGCGCATTTTACTTTGCACACTCAGCCCTACTCTTACTTACATTGTCATCACTGTGGCACCGTT
CATCGCTTGCCAGACCAATGCCCTGAGTGTCAGCAAAAGAGCCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTCCCAGATCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAACAAAATAAACCTTCGATTTTACTCGGTACGCAAATGTTGGCAAAAGGTCACCATTTTCCG
CATGTGACCTTGGTTGCTATTTTAGACATCGATGCAGGTTTATTGAGTGTCGATATTCGAGCGCCAGAGCGTACTGCTCA
ATTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACATAAGGGTCATGTTTATTTACAGACTTTAAGGCCAGATC
ACCCTTTATTGACCACACTTATTGAAAAAGATTATCGGGCAGTGGCGAAACAAACATTGGCTGAGCGTAAAGTTGCATTA
CTGCCGCCTTATCGCTATGCCGTACTTATACGCGCTGAATCGAAAGATCGCGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATAGCAGGTGATATTGTTGATATCTGGGGACCAATTCCAGCGCCAATGGAACGTAAAGCAG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTCCATGCGCCAAGACAGCATCAACTCAGACTCTCAATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(16-114)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.844

100

0.978